PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G08060.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 756aa    MW: 82846.5 Da    PI: 7.5984
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G08060.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.44.3e-1748881757
                     HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     ++F+++++p++++ +eLAk+l++te+qVk+WFqNrR+++kk
  OMERI08G08060.4 48 RAFQSCPNPDRNDLKELAKELNMTETQVKYWFQNRRTQMKK 88
                     58*************************************97 PP
2START109.36.1e-352434708204
                      HHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
            START   8 qelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                      +e++ k +++ p+W         es+n++e+l k  +  +     +++ + r++++v + +++lv++lld + +W e ++    +a t++ is+
  OMERI08G08060.4 243 NESLVKKKENGPLWLPHMdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLLDAN-RWRELFPgivaSANTTKIIST 334
                      566667788999999888889999********999553.3589999**************************.******99999********** PP

                      T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEEECTCEE CS
            START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliepksnghs 162
                      g      g lqlm aelq++sp vp  d++f+R++ q g g w +vdvS+d   + ++         ss  +R   ++llpSg++ie+++ng+s
  OMERI08G08060.4 335 GpsnlhdGLLQLMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDVSIDTVLPGESktaqssvqtSSTAARrmeVRLLPSGCVIEEMENGYS 428
                      ***************************************************9988887764322332222222344899*************** PP

                      EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
            START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                      kvtw+ h+ +++r ++ l++sl++s  a ga +wva lqr+ 
  OMERI08G08060.4 429 KVTWMVHAAYDERAVPVLYHSLLRSAKALGACRWVASLQRHS 470
                      ****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.4E-102393IPR001356Homeobox domain
SuperFamilySSF466892.86E-144891IPR009057Homeodomain-like
PfamPF000461.4E-144888IPR001356Homeobox domain
PROSITE profilePS5007113.754889IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-154895IPR009057Homeodomain-like
CDDcd000866.17E-154888No hitNo description
PROSITE profilePS5084824.456218475IPR002913START domain
SuperFamilySSF559611.36E-19222470No hitNo description
CDDcd088751.62E-92222471No hitNo description
SMARTSM002343.3E-12227472IPR002913START domain
PfamPF018528.7E-28243470IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MAMAHMLGWA GPSLHASDHH CLRPRRRTPP PEPCPSLGRR GGDRGSPRAF QSCPNPDRND  60
LKELAKELNM TETQVKYWFQ NRRTQMKKFK NNEEHKLLQK ENEELKKENA ELRNRMMNST  120
CRACDLPLFH IDCHHWENPM LKGENKGNHG VTSNLIPQAV SSLLPSSSGF VASGSNLSSN  180
AVLMPVSVMP SSVLQPAPAI SGANFPILHN LSANANDGYT EKNVLLDLAN RAMEEFFSLI  240
KENESLVKKK ENGPLWLPHM DILGVESLNY QEYLAKSRTI GQKPVDFKVV VTRDTAIVNG  300
SCVDLVKSLL DANRWRELFP GIVASANTTK IISTGPSNLH DGLLQLMRAE LQVMSPEVPV  360
CDVTFLRQSV QFGSGLWCVV DVSIDTVLPG ESKTAQSSVQ TSSTAARRME VRLLPSGCVI  420
EEMENGYSKV TWMVHAAYDE RAVPVLYHSL LRSAKALGAC RWVASLQRHS QFLSGLHKYI  480
FCPDSTKVVM RRKVLYLVKQ MTSSFTGLFA SMSKATLQDG DDSHFAHQIV GSATGEPAGL  540
LLSATTTIWL PSVNPRRVYD HLRDEQCHGE WRCLLGEQLN QGNALPYGAP LNGETVPEFY  600
RMVNGLHEGH AISLISPREM GGNISNTLLL QEARTDLSGS LIVYARTDVN TVHSIMNSGL  660
NPATVFLVSS GCAILPDCLE SFPLHPAATA DQAGTSSAAI ASRSETGGSF VTVTYQMFFS  720
SQGGAAPASS SIHQGHDALK KATDMFKVVL DTLTVA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004410.0AK100441.1 Oryza sativa Japonica Group cDNA clone:J023089M04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650917.10.0homeobox-leucine zipper protein ROC6-like isoform X2
TrEMBLA0A0E0EJW20.0A0A0E0EJW2_9ORYZ; Uncharacterized protein
STRINGOMERI08G07970.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.17e-91HD-ZIP family protein