PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI08G08060.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 869aa MW: 95726.5 Da PI: 8.0824 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.5 | 3e-20 | 146 | 201 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r+ + +t +q e+L+++F+++++p++++ +eLAk+l++te+qVk+WFqNrR+++kk OMERI08G08060.2 146 RRYQLLTMQQKETLNRAFQSCPNPDRNDLKELAKELNMTETQVKYWFQNRRTQMKK 201 6677899***********************************************97 PP | |||||||
2 | START | 108.9 | 7.9e-35 | 356 | 583 | 8 | 204 |
HHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 8 qelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 +e++ k +++ p+W es+n++e+l k + + +++ + r++++v + +++lv++lld + +W e ++ +a t++ is+ OMERI08G08060.2 356 NESLVKKKENGPLWLPHMdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLLDAN-RWRELFPgivaSANTTKIIST 447 566667788999999888889999********999553.3589999**************************.******99999********** PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEEECTCEE CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliepksnghs 162 g g lqlm aelq++sp vp d++f+R++ q g g w +vdvS+d + ++ ss +R ++llpSg++ie+++ng+s OMERI08G08060.2 448 GpsnlhdGLLQLMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDVSIDTVLPGESktaqssvqtSSTAARrmeVRLLPSGCVIEEMENGYS 541 ***************************************************9988887764322332222222344899*************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 kvtw+ h+ +++r ++ l++sl++s a ga +wva lqr+ OMERI08G08060.2 542 KVTWMVHAAYDERAVPVLYHSLLRSAKALGACRWVASLQRHS 583 ****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-17 | 132 | 184 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.59E-18 | 134 | 203 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.698 | 142 | 202 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-18 | 144 | 206 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.71E-19 | 145 | 201 | No hit | No description |
Pfam | PF00046 | 7.5E-18 | 146 | 201 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-4 | 185 | 227 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50848 | 24.456 | 331 | 588 | IPR002913 | START domain |
CDD | cd08875 | 6.12E-92 | 335 | 584 | No hit | No description |
SuperFamily | SSF55961 | 1.79E-19 | 335 | 583 | No hit | No description |
SMART | SM00234 | 3.3E-12 | 340 | 585 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-27 | 356 | 583 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 869 aa Download sequence Send to blast |
MAMAHMLGWA GPSLHASDHH CLRPRRRTPP PEPCPSLGRR GGDRGSPRSC AVLAIPLVGL 60 CPHPDDFRFT SLALLVFFRS SEVMDGELKL MASYVSKLKF ILQKDQQQEP HTANLLVLLG 120 SSNQDKRNGL SQGENRMDTC TRKKPRRYQL LTMQQKETLN RAFQSCPNPD RNDLKELAKE 180 LNMTETQVKY WFQNRRTQMK KFKNNEEHKL LQKENEELKK ENAELRNRMM NSTCRACDLP 240 LFHIDCHHWE NPMLKGENKG NHGVTSNLIP QAVSSLLPSS SGFVASGSNL SSNAVLMPVS 300 VMPSSVLQPA PAISGANFPI LHNLSANAND GYTEKNVLLD LANRAMEEFF SLIKENESLV 360 KKKENGPLWL PHMDILGVES LNYQEYLAKS RTIGQKPVDF KVVVTRDTAI VNGSCVDLVK 420 SLLDANRWRE LFPGIVASAN TTKIISTGPS NLHDGLLQLM RAELQVMSPE VPVCDVTFLR 480 QSVQFGSGLW CVVDVSIDTV LPGESKTAQS SVQTSSTAAR RMEVRLLPSG CVIEEMENGY 540 SKVTWMVHAA YDERAVPVLY HSLLRSAKAL GACRWVASLQ RHSQFLSGLH KYIFCPDSTK 600 VVMRRKVLYL VKQMTSSFTG LFASMSKATL QDGDDSHFAH QIVGSATGEP AGLLLSATTT 660 IWLPSVNPRR VYDHLRDEQC HGEWRCLLGE QLNQGNALPY GAPLNGETVP EFYRMVNGLH 720 EGHAISLISP REMGGNISNT LLLQEARTDL SGSLIVYART DVNTVHSIMN SGLNPATVFL 780 VSSGCAILPD CLESFPLHPA ATADQAGTSS AAIASRSETG GSFVTVTYQM FFSSQGGAAP 840 ASSSIHQGHD ALKKATDMFK VVLDTLTVA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100441 | 0.0 | AK100441.1 Oryza sativa Japonica Group cDNA clone:J023089M04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650917.1 | 0.0 | homeobox-leucine zipper protein ROC6-like isoform X2 | ||||
TrEMBL | A0A0E0EJW0 | 0.0 | A0A0E0EJW0_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G07970.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16978 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 6e-94 | HD-ZIP family protein |