PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G08060.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 869aa    MW: 95726.5 Da    PI: 8.0824
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G08060.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53e-20146201257
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      r+ + +t +q e+L+++F+++++p++++ +eLAk+l++te+qVk+WFqNrR+++kk
  OMERI08G08060.2 146 RRYQLLTMQQKETLNRAFQSCPNPDRNDLKELAKELNMTETQVKYWFQNRRTQMKK 201
                      6677899***********************************************97 PP

2START108.97.9e-353565838204
                      HHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
            START   8 qelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                      +e++ k +++ p+W         es+n++e+l k  +  +     +++ + r++++v + +++lv++lld + +W e ++    +a t++ is+
  OMERI08G08060.2 356 NESLVKKKENGPLWLPHMdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLLDAN-RWRELFPgivaSANTTKIIST 447
                      566667788999999888889999********999553.3589999**************************.******99999********** PP

                      T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEEECTCEE CS
            START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliepksnghs 162
                      g      g lqlm aelq++sp vp  d++f+R++ q g g w +vdvS+d   + ++         ss  +R   ++llpSg++ie+++ng+s
  OMERI08G08060.2 448 GpsnlhdGLLQLMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDVSIDTVLPGESktaqssvqtSSTAARrmeVRLLPSGCVIEEMENGYS 541
                      ***************************************************9988887764322332222222344899*************** PP

                      EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
            START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                      kvtw+ h+ +++r ++ l++sl++s  a ga +wva lqr+ 
  OMERI08G08060.2 542 KVTWMVHAAYDERAVPVLYHSLLRSAKALGACRWVASLQRHS 583
                      ****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-17132184IPR009057Homeodomain-like
SuperFamilySSF466891.59E-18134203IPR009057Homeodomain-like
PROSITE profilePS5007116.698142202IPR001356Homeobox domain
SMARTSM003894.4E-18144206IPR001356Homeobox domain
CDDcd000863.71E-19145201No hitNo description
PfamPF000467.5E-18146201IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-4185227IPR009057Homeodomain-like
PROSITE profilePS5084824.456331588IPR002913START domain
CDDcd088756.12E-92335584No hitNo description
SuperFamilySSF559611.79E-19335583No hitNo description
SMARTSM002343.3E-12340585IPR002913START domain
PfamPF018521.1E-27356583IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MAMAHMLGWA GPSLHASDHH CLRPRRRTPP PEPCPSLGRR GGDRGSPRSC AVLAIPLVGL  60
CPHPDDFRFT SLALLVFFRS SEVMDGELKL MASYVSKLKF ILQKDQQQEP HTANLLVLLG  120
SSNQDKRNGL SQGENRMDTC TRKKPRRYQL LTMQQKETLN RAFQSCPNPD RNDLKELAKE  180
LNMTETQVKY WFQNRRTQMK KFKNNEEHKL LQKENEELKK ENAELRNRMM NSTCRACDLP  240
LFHIDCHHWE NPMLKGENKG NHGVTSNLIP QAVSSLLPSS SGFVASGSNL SSNAVLMPVS  300
VMPSSVLQPA PAISGANFPI LHNLSANAND GYTEKNVLLD LANRAMEEFF SLIKENESLV  360
KKKENGPLWL PHMDILGVES LNYQEYLAKS RTIGQKPVDF KVVVTRDTAI VNGSCVDLVK  420
SLLDANRWRE LFPGIVASAN TTKIISTGPS NLHDGLLQLM RAELQVMSPE VPVCDVTFLR  480
QSVQFGSGLW CVVDVSIDTV LPGESKTAQS SVQTSSTAAR RMEVRLLPSG CVIEEMENGY  540
SKVTWMVHAA YDERAVPVLY HSLLRSAKAL GACRWVASLQ RHSQFLSGLH KYIFCPDSTK  600
VVMRRKVLYL VKQMTSSFTG LFASMSKATL QDGDDSHFAH QIVGSATGEP AGLLLSATTT  660
IWLPSVNPRR VYDHLRDEQC HGEWRCLLGE QLNQGNALPY GAPLNGETVP EFYRMVNGLH  720
EGHAISLISP REMGGNISNT LLLQEARTDL SGSLIVYART DVNTVHSIMN SGLNPATVFL  780
VSSGCAILPD CLESFPLHPA ATADQAGTSS AAIASRSETG GSFVTVTYQM FFSSQGGAAP  840
ASSSIHQGHD ALKKATDMFK VVLDTLTVA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004410.0AK100441.1 Oryza sativa Japonica Group cDNA clone:J023089M04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650917.10.0homeobox-leucine zipper protein ROC6-like isoform X2
TrEMBLA0A0E0EJW00.0A0A0E0EJW0_9ORYZ; Uncharacterized protein
STRINGOMERI08G07970.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169781212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.16e-94HD-ZIP family protein