PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI08G05700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 26893.6 Da PI: 9.5694 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.6 | 1.3e-32 | 22 | 108 | 54 | 129 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...........kgelvglkktLvfykgrapkgektdWvmheyrle 129 + kewyfFs rd+kyatg+r+nrat+sgyWkatgkd++++++ ++vg++ktLvfy+grapkg+kt+Wvmhe+rle OMERI08G05700.1 22 GGKEWYFFSLRDRKYATGHRTNRATRSGYWKATGKDRSITRRpisgepsssaaAASAVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 108 679**************************************9998777665555555***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.735 | 1 | 126 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.27E-37 | 14 | 126 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-16 | 25 | 107 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAALSAAIVD RFNLVADAAC VGGKEWYFFS LRDRKYATGH RTNRATRSGY WKATGKDRSI 60 TRRPISGEPS SSAAAASAVG MRKTLVFYRG RAPKGRKTEW VMHEFRLEPQ PLHLKEDWVL 120 CRVFYKTRQT IPSPSSEEAI TLPNELDLPA TPSLPPLIDA YITFDSAPTT TPSMVGSYEQ 180 VSCFSGLPAL PMKGSISFGD LLAMDTSAEK KAIRVLHNSN TAKLEFSPDW GQESGLSQMW 240 NPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-29 | 14 | 126 | 61 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-29 | 14 | 126 | 61 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-29 | 14 | 126 | 61 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-29 | 14 | 126 | 61 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-29 | 14 | 126 | 64 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-29 | 14 | 126 | 64 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-29 | 14 | 126 | 64 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-29 | 14 | 126 | 64 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-29 | 14 | 126 | 64 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-29 | 14 | 126 | 64 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-29 | 14 | 126 | 64 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-29 | 14 | 126 | 64 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-29 | 14 | 126 | 61 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-29 | 14 | 126 | 61 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120197 | 0.0 | AK120197.1 Oryza sativa Japonica Group cDNA clone:J013036M14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648318.1 | 1e-147 | NAC domain-containing protein 21/22 isoform X1 | ||||
Refseq | XP_015648319.1 | 1e-148 | NAC domain-containing protein 21/22 isoform X2 | ||||
Swissprot | Q84TE6 | 1e-53 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0E0EIZ3 | 0.0 | A0A0E0EIZ3_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G05710.1 | 1e-168 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.1 | 3e-56 | NAC domain containing protein 1 |