PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI08G03690.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 207aa MW: 21723.9 Da PI: 5.4874 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 51 | 3.3e-16 | 41 | 70 | 26 | 55 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ OMERI08G03690.3 41 GATPKSVLELMDVKDLTLAHVKSHLQMYRT 70 49***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-15 | 29 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.99E-6 | 40 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-11 | 41 | 70 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MELFPSQPDL SLQIGLPTGA AAAAHGHGLN ARFFAAAAGA GATPKSVLEL MDVKDLTLAH 60 VKSHLQMYRT VKNTERPAAS SDQADGFENG SAGEICDENS LDLHGGCRPE AMSAATAAAP 120 ARHGRLAACN DHGSSTGAHG ALWNSSSRED WSGFHESNTG SMQALKDMQS KSLEILSDMN 180 SCVSETTSST SELNLEFTLG RPQNRPN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 1e-100 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648943.1 | 1e-110 | probable transcription factor RL9 isoform X1 | ||||
TrEMBL | A0A0E0EI74 | 1e-150 | A0A0E0EI74_9ORYZ; Uncharacterized protein | ||||
STRING | OS08T0160300-00 | 1e-110 | (Oryza sativa) | ||||
STRING | OBART08G03630.1 | 1e-111 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 7e-22 | G2-like family protein |