PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G03500.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 729aa    MW: 80512.5 Da    PI: 4.3638
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G03500.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.3e-5291421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrFhPtdeelv +yLk k++g+  +++evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ +
  OMERI08G03500.3   9 LPLGFRFHPTDEELVRHYLKGKITGQIRSEAEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVI 102
                      699************************99999***************96446677888************************************ PP

              NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       sk    k++++g+kktLvf++grapkge+t W+mheyr 
  OMERI08G03500.3 103 RSKgdkkKQQVIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                      **988777777***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-593163IPR003441NAC domain
PROSITE profilePS5100557.5689163IPR003441NAC domain
PfamPF023651.5E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MTVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRSEAE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKKK QQVIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKIER PSPDEVDRSG  180
YSPTPSRSTP DNMEPIEDGN TPLNRESPES ALHESPIDLP ALTEAQAAPI TRWLADRTDN  240
ATTNEVNISH MPHHGLDGGA KASPSAGAFP QLIGSQQNIH DNNELATVSA PMLPHEDFNN  300
FPLGAIGNFD GNMNPRDPVE EFLNQTIADP DEHSSTTSKA QYDSDTGIIP TEFENHGVMQ  360
GEFMDDLSGL ENLDFWPDDR NPQLSALYED TPLLPYDSTD QDVLSMDSGA ESLQDLFNSM  420
DDSNARNNVW GNEPFLQGTG FPMSWPVQSN SAFPNQGTAN RRLMLQLSES LSPDFDASMT  480
RDECEDEEPG IVVTSKYVNE APEESTAEKD MPSDGDDAEP TGITILRRRH APTASSLSDG  540
DDAESTGITI LRRQQAPNAS LLSDGDDAES TGITILRRRQ APTASSASSF TQQGAAVQRV  600
RLQSNLDAAP CSSIDGSSSC IIDEGESERT MEKPEIEEHA GSTLAEGGTS HEDDQEEHDA  660
SAANAKSVLR LRKTAEGSDK ENKQEEEEGA LDSHVRAPGN KRGFPSYIIW LVLSVALVLL  720
ISLGIYGWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-45916417166NO APICAL MERISTEM PROTEIN
1ut4_B2e-45916417166NO APICAL MERISTEM PROTEIN
1ut7_A2e-45916417166NO APICAL MERISTEM PROTEIN
1ut7_B2e-45916417166NO APICAL MERISTEM PROTEIN
4dul_A2e-45916417166NAC domain-containing protein 19
4dul_B2e-45916417166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329680.0CT832968.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650289.10.0NAC domain-containing protein 14 isoform X2
TrEMBLA0A0E0EI460.0A0A0E0EI46_9ORYZ; Uncharacterized protein
STRINGOMERI08G03500.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.15e-70NAC 014