PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI08G03480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 290aa MW: 30955.2 Da PI: 4.885 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 86.2 | 2.9e-27 | 71 | 160 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+kv tpsdv+k++rlv+pk++ae++ + +++l +ed+ g W+++++y+++s++yv+tkGW++Fv+a +L +gD+v F++ ++++ OMERI08G03480.1 71 FDKVVTPSDVGKLNRLVVPKQHAERFFPAAAAGTQLCFEDRGGTPWRFRYSYWGSSQSYVMTKGWSRFVRAARLSAGDTVSFSRA--ADGRY 160 89************************666678889************************************************43..45544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-36 | 66 | 159 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.37E-28 | 68 | 162 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.77E-23 | 69 | 162 | No hit | No description |
Pfam | PF02362 | 1.5E-24 | 71 | 159 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-18 | 71 | 172 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.958 | 71 | 168 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MYMDLTLGGA LLQVEEATEE EEEEEEEEQA LALGQEPAPA AAAAALVLGR RHHGGGGGGG 60 VVVAAEREHM FDKVVTPSDV GKLNRLVVPK QHAERFFPAA AAGTQLCFED RGGTPWRFRY 120 SYWGSSQSYV MTKGWSRFVR AARLSAGDTV SFSRAADGRY FIDYRHCHRH GGRDISFAAA 180 ATMPAAAVAW PLFGRVQTAA PVSYGGGGGH GSAAAATMFL DTVAPVVGAA GHRGEVGPSG 240 QRSFRLFGVN VECGGDVDAA AEEEDADDDV DDGDHRRGEE MELVMWTNHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-46 | 65 | 166 | 2 | 112 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-46 | 65 | 166 | 2 | 112 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004698 | 0.0 | AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649372.1 | 1e-138 | putative B3 domain-containing protein Os08g0157700 | ||||
Swissprot | Q7EZD5 | 1e-139 | Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700 | ||||
TrEMBL | A0A0E0EI43 | 0.0 | A0A0E0EI43_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G03480.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14164 | 24 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 2e-44 | B3 family protein |