PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G01760.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 611aa    MW: 66171.2 Da    PI: 6.5511
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G01760.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06217240327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C++f++ G+Ck G +C+++H +
  OMERI08G01760.3 217 RRPCHYFSK-GICKNGQNCHYSHHQ 240
                      79*******.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.098214241IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4217240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5217239IPR000571Zinc finger, CCCH-type
PfamPF128722.7E-17267345IPR025605OST-HTH/LOTUS domain
PROSITE profilePS5164411.663267350IPR025605OST-HTH/LOTUS domain
PROSITE profilePS5010210.207376455IPR000504RNA recognition motif domain
SMARTSM003601.8E-5377451IPR000504RNA recognition motif domain
CDDcd124581.64E-32378451No hitNo description
Gene3DG3DSA:3.30.70.3302.6E-7389457IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.14E-9389482IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MEVPELVKLA FARVQRVEPE HVGKIFGVML LREPDEDELV QLAYGPETTL LAKVEDTKAA  60
LTVIYARCSA AAAHGPPGGG GVGVGGGGGY HQQPQQLFSR PPVPACGGVR HHYSPAAAAA  120
AAFGYQVQSP QYWPDSPPAP PTKAAQQEFA PPGLVVDASA EGPYPLRGGQ HVLDDNNFGG  180
GYYYPAGEDA FPNGGGGGGG GGGSPARARR SNGLSTRRPC HYFSKGICKN GQNCHYSHHQ  240
VYQDALAGAA INGDVYNHQP GGVTPGSLET LEMEITELLN SRRGQPVSIA SLPTLYGEKY  300
GKGLQADGYL TESQRHGKAG YSLTRLLSRL NKIRVIERPH GQHSVVLAED AAKYMDFRGG  360
GGGGGGDTGS VPASSHQIYL TFPAESTFAE DDVANYFGSA IRHYGPVRDV RIPCQERRMF  420
GFVSFQSPET VSTILMRRNP HFICGSRVLV KPYREKSKCV DRTCVDNIKS MVPYCPPRFF  480
EFDQELYTAE YDASRLMRKQ LAEKREMLLE MERRRATVRR LESMPPQFAY FDCSIEDASP  540
LHSLQDDSKQ LDLMNPSLAS PDPLEIVSNS QAPPTQAGNI YDDHESNQIE LLPESPFAAS  600
APAGNSISTI I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118050.0AK111805.1 Oryza sativa Japonica Group cDNA clone:J013094C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648182.10.0zinc finger CCCH domain-containing protein 54 isoform X1
SwissprotQ6ZK570.0C3H54_ORYSJ; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A0E0EHD50.0A0A0E0EHD5_9ORYZ; Uncharacterized protein
STRINGOMERI08G01800.20.0(Oryza meridionalis)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]