PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G01230.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 405aa    MW: 44108.5 Da    PI: 9.6114
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G01230.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.45.8e-49301552128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPt+eel+ +yL++kvegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v+++
  OMERI08G01230.2  30 MPGFRFHPTEEELIEFYLRRKVEGKRFNI-ELIAFVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVKVE 122
                      79***************************.89***************888889***************************************** PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkktLvfy g+apkg +++W+m+eyrl
  OMERI08G01230.2 123 GDRPIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 155
                      *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.0329175IPR003441NAC domain
SuperFamilySSF1019411.57E-5629175IPR003441NAC domain
PfamPF023651.8E-2431155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MRGSDHHQDV VAAPRGGGGG DDGQSHDMVM PGFRFHPTEE ELIEFYLRRK VEGKRFNIEL  60
IAFVDLYRYD PWDLPALASI GDKEWFFYVP RDRKYRNGDR PNRVTPSGYW KATGADRMVK  120
VEGDRPIGLK KTLVFYVGKA PKGLRSSWIM NEYRLPHGDA DRYQKEISLC RVYKRPGIED  180
NFHLTGTTTK SSGSKAAAAM GKKHAAAHRT SSTAAAAAPR LAPMFDGGGG HHSSAALMGK  240
ASPATYNASH AAAEGTNAIA MSSLSAAATL HPPAAMFRST ASVASLSSTT STEEDGTSLF  300
HLKAGATTTN TTAMHHHQQQ QQLPASTHAL LNTNSSAMAT IPIDELSRAI GSYSNHHHQP  360
NSTTTHQSTA LPPSQQSPLL PFASMEKIWD WNPLLESPKV CTNFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-543117519165NO APICAL MERISTEM PROTEIN
1ut4_B2e-543117519165NO APICAL MERISTEM PROTEIN
1ut7_A2e-543117519165NO APICAL MERISTEM PROTEIN
1ut7_B2e-543117519165NO APICAL MERISTEM PROTEIN
4dul_A2e-543117519165NAC domain-containing protein 19
4dul_B2e-543117519165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710520.0AK071052.1 Oryza sativa Japonica Group cDNA clone:J023075E09, full insert sequence.
GenBankAK0722750.0AK072275.1 Oryza sativa Japonica Group cDNA clone:J023012F04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659059.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A0E0EH400.0A0A0E0EH40_9ORYZ; Uncharacterized protein
STRINGOMERI08G01230.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.13e-97NAC domain containing protein 35