PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI08G01230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 405aa MW: 44108.5 Da PI: 9.6114 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.4 | 5.8e-49 | 30 | 155 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v+++ OMERI08G01230.1 30 MPGFRFHPTEEELIEFYLRRKVEGKRFNI-ELIAFVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVKVE 122 79***************************.89***************888889***************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkktLvfy g+apkg +++W+m+eyrl OMERI08G01230.1 123 GDRPIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 155 *******************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.03 | 29 | 175 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-56 | 29 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 31 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 405 aa Download sequence Send to blast |
MRGSDHHQDV VAAPRGGGGG DDGQSHDMVM PGFRFHPTEE ELIEFYLRRK VEGKRFNIEL 60 IAFVDLYRYD PWDLPALASI GDKEWFFYVP RDRKYRNGDR PNRVTPSGYW KATGADRMVK 120 VEGDRPIGLK KTLVFYVGKA PKGLRSSWIM NEYRLPHGDA DRYQKEISLC RVYKRPGIED 180 NFHLTGTTTK SSGSKAAAAM GKKHAAAHRT SSTAAAAAPR LAPMFDGGGG HHSSAALMGK 240 ASPATYNASH AAAEGTNAIA MSSLSAAATL HPPAAMFRST ASVASLSSTT STEEDGTSLF 300 HLKAGATTTN TTAMHHHQQQ QQLPASTHAL LNTNSSAMAT IPIDELSRAI GSYSNHHHQP 360 NSTTTHQSTA LPPSQQSPLL PFASMEKIWD WNPLLESPKV CTNFK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-54 | 31 | 175 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 31 | 175 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 31 | 175 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 31 | 175 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-54 | 31 | 175 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 31 | 175 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK071052 | 0.0 | AK071052.1 Oryza sativa Japonica Group cDNA clone:J023075E09, full insert sequence. | |||
GenBank | AK072275 | 0.0 | AK072275.1 Oryza sativa Japonica Group cDNA clone:J023012F04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659059.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | A0A0E0EH40 | 0.0 | A0A0E0EH40_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G01230.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7706 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02450.1 | 3e-97 | NAC domain containing protein 35 |