PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G00520.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 285aa    MW: 29334.2 Da    PI: 4.3828
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G00520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-1793143155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr +  +g+Wv+eIr+p++   + r++lg+f ta++Aa+a++ a+++++g
  OMERI08G00520.1  93 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTADMAARAHDVAALAIKG 143
                      68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575124No hitNo description
PfamPF008473.4E-1293143IPR001471AP2/ERF domain
PROSITE profilePS5103223.11794151IPR001471AP2/ERF domain
SMARTSM003802.6E-3494157IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-2194152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.4E-3294152IPR001471AP2/ERF domain
PRINTSPR003673.8E-1095106IPR001471AP2/ERF domain
CDDcd000182.84E-3095153No hitNo description
PRINTSPR003673.8E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAMAKELQET SSSSSSSAAS TSSCSSAVTD ASSSPARPNA VAGGKRKKEV VGEADEAAGG  60
GAGEEEEEEE AAAAGKSSAA TKTRKRSSDG KHPVYRGVRM RAWGKWVSEI REPRKKSRIW  120
LGTFPTADMA ARAHDVAALA IKGRAAHLNF PDLAGVLPRA ASASPKDVQA AAALAAAFTT  180
SPSSSPSSSS SADDVAPCVV HADADEQPAA AAQNDDDDGS TTAPVAAAAV AEEQQLFDLP  240
DLLFDIQDGP FGFPAMWAPL ADVDEVNAEL RLEEPLLWDL GVTDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1786151672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798740.0AC079874.21 Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614793.11e-136ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ77e-52ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0E0EGR10.0A0A0E0EGR1_9ORYZ; Uncharacterized protein
STRINGOMERI08G00510.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]