PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI08G00390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 323aa MW: 34051.2 Da PI: 8.9755 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.3e-19 | 167 | 221 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k OMERI08G00390.1 167 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTK 221 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126 | 1.7e-40 | 167 | 256 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LE++F+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l++en+rL++e +eLr +l OMERI08G00390.1 167 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELR-AL 256 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.1E-27 | 21 | 142 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 6.9E-19 | 154 | 217 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.13E-19 | 157 | 224 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 163 | 223 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-16 | 165 | 227 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.8E-16 | 167 | 221 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.68E-16 | 167 | 224 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 198 | 221 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.6E-23 | 223 | 266 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.2E-10 | 223 | 257 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MEMMVHGRRD EQYGGLGLGL GLGLGLSLGV AGGAADDEQP PRRGPAPPPQ QQQLCGWNGG 60 GGGGLFSSSS SSDHRGRRSA MMACHDVVEM PFLRGIDVNR APAAETTTTT ARGPSCSEED 120 EEPGASSPNS TLSSLSGKRG APPSAATAAI AAAAASDDED SGGGGSRKKL RLSKDQAAVL 180 EDTFKEHNTL NPKQKAALAR QLNLKPRQVE VWFQNRRART KLKQTEVDCE LLKRCCETLT 240 DENRRLHREL QELRALKLAA AAAAAPHHLY GARVPPPTTL TMCPSCERVA SAATTTRNNS 300 GAAPARPVPT RPWPPAAAQR SSA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 171 | SRKKLRL |
2 | 215 | 223 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:10934011, ECO:0000269|PubMed:9076993}. | |||||
UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10934011}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065404 | 0.0 | AK065404.1 Oryza sativa Japonica Group cDNA clone:J013006I17, full insert sequence. | |||
GenBank | CT832944 | 0.0 | CT832944.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107F07, full insert sequence. | |||
GenBank | X96681 | 0.0 | X96681.2 Oryza sativa mRNA for DNA-binding protein (Oshox1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613269.1 | 1e-154 | homeobox-leucine zipper protein HOX1 | ||||
Swissprot | Q40691 | 1e-155 | HOX1_ORYSI; Homeobox-leucine zipper protein HOX1 | ||||
Swissprot | Q7XC54 | 1e-155 | HOX1_ORYSJ; Homeobox-leucine zipper protein HOX1 | ||||
TrEMBL | A0A0E0EGP6 | 0.0 | A0A0E0EGP6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI08G00390.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2587 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 3e-58 | homeobox-leucine zipper protein 4 |