PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI08G00160.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 335aa    MW: 35429.9 Da    PI: 9.4905
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI08G00160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.29.5e-2352141186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +Wt++e+laLiea+r+++e lr+g+l++ +W++v+ ++        +  ++s +qC++k+e+l+kry+++++++ +r+++   ++p+f  l+
  OMERI08G00160.1  52 CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERARAAGRSKG--PKWPFFPLLH 141
                      8*************************************99998888899**************************98443..47****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-2151142No hitNo description
PROSITE profilePS500905.99353115IPR017877Myb-like domain
SMARTSM005951.1E-560144IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSSSSSPPPN PDALSSPDLP PLAAPAAAAA AAAAAVSSGG AGGSGRRLPP PCWTHEETLA  60
LIEAYRDRWE GLRKGNLRAS DWDDVAGAVT ARCGRFPTAT HKSGVQCRHK IEKLRKRYRA  120
ERARAAGRSK GPKWPFFPLL HDLAGGGAPD PSPNPIIKIK SKGPAAAAAS PSPASPSPVS  180
SPSSEEEEEE EAAAAVADAG RSRSLHGLIS NGGSGSGLRF TIPKASRSKP VAQRGQPTAI  240
KVEKSEEDAE AEAMAEVASA LRAVGDKFLR MEERRLEISL QIEKERMESE MKRTQTLLDA  300
QQLFVEAFLG KQQQHHHHKK AKVISAAAAA AMDED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0847630.0AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574347.11e-155trihelix transcription factor ASIL2
TrEMBLA0A0E0EGM30.0A0A0E0EGM3_9ORYZ; Uncharacterized protein
STRINGOMERI08G00150.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-17Trihelix family protein