PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G23010.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 359aa MW: 38793.4 Da PI: 6.5209

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G23010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4.1e-10	154	199	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l OMERI07G23010.1 154 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLT 199 9****************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-14	150	214	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	152	215	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-10	154	205	No hit	No description
Pfam	PF00170	8.0E-9	154	199	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.6E-10	154	208	No hit	No description
CDD	cd14703	4.17E-21	155	204	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MAMPPKPGDQ PSPGRSPNPN LNLPCPLPPP PPHHRRARSE VAFRFPDDLG LGGGADGGGF 60 DEIGSEDDLF STFMDMEKIA GADRDRAAET SSPPRPTKHR HSASFDGFAF GAGVGGPGPG 120 LGKQQEGGVF SEVMEAKKAM SSEQLAELAA IDPKRAKRIL ANRQSAARSK ERKARYITEL 180 ERKVQTLQTE ATTLSAQLTL FQRDTTGLSA ENAELKIRLQ AMEQQAQLRD ALNDALKQEV 240 ERLKIATGEM AKSNDAYNTG MQQVPYSPSF FQLSEQHAVQ HQAGVQQLPH QFQQPHPSVP 300 SHQMLSHPNS LSDMMQQDSL GRLQGLDIGK GPVAVKNEAE VVVKSEGSSI SAGESNSTF

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MAMPPKPGDQ PSPGRSPNPN LNLPCPLPPP PPHHRRARSE VAFRFPDDLG LGGGADGGGF  60
DEIGSEDDLF STFMDMEKIA GADRDRAAET SSPPRPTKHR HSASFDGFAF GAGVGGPGPG  120
LGKQQEGGVF SEVMEAKKAM SSEQLAELAA IDPKRAKRIL ANRQSAARSK ERKARYITEL  180
ERKVQTLQTE ATTLSAQLTL FQRDTTGLSA ENAELKIRLQ AMEQQAQLRD ALNDALKQEV  240
ERLKIATGEM AKSNDAYNTG MQQVPYSPSF FQLSEQHAVQ HQAGVQQLPH QFQQPHPSVP  300
SHQMLSHPNS LSDMMQQDSL GRLQGLDIGK GPVAVKNEAE VVVKSEGSSI SAGESNSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102562	0.0	AK102562.1 Oryza sativa Japonica Group cDNA clone:J033097I23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646776.1	0.0	transcription factor RF2b-like
Swissprot	Q6S4P4	1e-142	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A0E0EG78	0.0	A0A0E0EG78_9ORYZ; Uncharacterized protein
STRING	OMERI07G23460.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	7e-80	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]