PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G19920.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 325aa    MW: 35391.2 Da    PI: 9.6378
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G19920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.87.9e-3432131297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                      lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++ +sksqlveK+rrLK+K++++v++ + sg+ +sf+++h+q ife+
  OMERI07G19920.1  32 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGSAFSFRSPHEQAIFEI 125
                      79************************99877778***************************************8889***************** PP

           DUF573  92 skkiWg 97 
                      ++ iW+
  OMERI07G19920.1 126 ARNIWR 131
                      *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-3033130IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MATPAAAGGG SGSVGGVGSS SGGGGGGERR PLFQRLWTEE DEIVILRGFA EFTAARGTAF  60
ASHQYDTDPF YEDMRGRLQL GFSKSQLVEK LRRLKRKYRN CVSRLRGSGS AFSFRSPHEQ  120
AIFEIARNIW RPTNKHGRDG DSDDEDATPV TPAPIPVNTS PNGEVKSPTS GRQRRRRRGG  180
DFAATAPAAA PATTYMVQPI QPVSVPVKMD DTLPALSQTT MPITVTMEGS EPIRLPIMPP  240
QPAVLDADKS CLTPLFKEMV RAVINIGSNP FGAQLPEPPH GLPMEGEKWR KQRILELEVY  300
LKRIELLQDQ VKATLEELKS SAPGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645065.10.0probable transcription factor At5g28040
TrEMBLA0A0E0EEY00.0A0A0E0EEY0_9ORYZ; Uncharacterized protein
STRINGONIVA07G23260.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.18e-47DNA-binding storekeeper protein-related transcriptional regulator