PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI07G19830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 427aa MW: 45500.2 Da PI: 8.1158 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 6e-17 | 100 | 147 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl OMERI07G19830.1 100 RGLWSPEEDEKLMNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 147 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.4e-17 | 153 | 197 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE++l+++++ +lG++ W+ Ia+ ++ gRt++++k++w++y OMERI07G19830.1 153 RGAFSQEEEDLIIHLHSMLGNK-WSQIAAQLP-GRTDNEVKNFWNSY 197 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.176 | 95 | 147 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-25 | 96 | 150 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.11E-30 | 98 | 194 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-13 | 99 | 149 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 100 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.10E-12 | 103 | 147 | No hit | No description |
PROSITE profile | PS51294 | 27.138 | 148 | 202 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-26 | 151 | 202 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-16 | 152 | 200 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-16 | 153 | 197 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.55E-11 | 155 | 198 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MHTTMATYLR ATSRLPPTLS PPSLSLPPFI PRLLPPPTPP LLCPSSSFRL RLRHRRRDIA 60 GGLVCSLSVV GGGNCDIEHG GVWWPSMAKR AGGARKKLRR GLWSPEEDEK LMNHIAKYGH 120 GCWSSVPKLA GLERCGKSCR LRWINYLRPD LKRGAFSQEE EDLIIHLHSM LGNKWSQIAA 180 QLPGRTDNEV KNFWNSYIKK KLRQRGIDPA THKPLAEVVA AAACARTPAV FSDAELILSS 240 IGVQPPPESY MYYDGSRYST ECGAASVGGD GSLSSLSGYS QATAEFAVDG ASASALLHCG 300 GGGPTSSGGG APAAPTAAVI PSVSSSSTLN SMAGLSPAAT TTTDEQYGNT NHLPWLELGP 360 STTTSSSAAT AAVDHYGAAL DELKWSDYVF DGYNHQLPPY NHGGIYGGGD SKDTAVHFDA 420 HALGNWC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-29 | 97 | 202 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. | |||
GenBank | CT836172 | 0.0 | CT836172.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN040M10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645477.1 | 0.0 | myb-related protein Hv33 | ||||
TrEMBL | A0A0E0EEX1 | 0.0 | A0A0E0EEX1_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI07G20260.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 7e-67 | myb domain protein 50 |