PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G19420.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 328aa    MW: 37110.9 Da    PI: 9.3423
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G19420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.5e-053574144
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44
                     +r  ++erE+  Rd+ N+ f+eL  ll ++     + + Ka +L
  OMERI07G19420.1 35 KRIHKSEREKLKRDKQNDLFNELGNLLEPD----RQNNGKACVL 74
                     68899**********************996....3445555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.8E-831103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1131103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.1533484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF001635.8E-8260327IPR001912Ribosomal protein S4/S9, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0019843Molecular FunctionrRNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVPRDRVNAA AGGGGEGRLV QSGIGNVKCD KKAPKRIHKS EREKLKRDKQ NDLFNELGNL  60
LEPDRQNNGK ACVLGETTRI LKDLLSQVES LRKENSSLKN ESHYVALERN ELHDDNSMLR  120
TEILELQNEL RTRMEGNPVW SHVNTRPALR VPYPTTRVFP VQHLPHLPVT TTAAFSQQQP  180
VIIEQHYATT PRELQLFPES ATSEDSEPSQ AHGISDHVTR PQPRYPTPTA TLPVNLFPVL  240
PGRQDQQCSS GTSGTNEEDR IVRTLGKIGP RDAPTTFKKP RPSYEKERLD AELKLVGEYG  300
LRCKRELWRV QYALSRIRNA ARELLTLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_SC1e-2326932846540S ribosomal protein S9
4v7e_BJ1e-2326932846540S ribosomal protein S4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709630.0AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence.
GenBankHQ8588560.0HQ858856.1 Oryza sativa Japonica Group isolate UT1619 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645391.11e-178transcription factor BHLH062-like
RefseqXP_015645393.11e-178transcription factor BHLH062-like
SwissprotQ69V101e-179BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A0E0EER10.0A0A0E0EER1_9ORYZ; Uncharacterized protein
STRINGOMERI07G19840.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.33e-36bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]