PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G18960.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 269aa    MW: 28608.1 Da    PI: 9.3465
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G18960.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.51.3e-29111165358
        CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p+YVNaKQ+++I++RR +Rak+e+e+++ +++rkpylheSRh+hA+rR+RgsgGrF
  OMERI07G18960.2 111 PIYVNAKQFNGIIRRRLARAKAEREHRV-SRGRKPYLHESRHRHAMRRARGSGGRF 165
                      9***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-31107168IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.93108168IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.8E-30111165IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-22111133IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860113133IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-22142165IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MIIGGLVHGA FTPSRWRRCP PMVEMVYRPA IPGDSDLGKD LKFHESSAPT IAAYSPLQEY  60
QGHFELALGH SMVCTNFCNS DQSYGVYSPY GAQTMAGRML LPPAIATDVG PIYVNAKQFN  120
GIIRRRLARA KAEREHRVSR GRKPYLHESR HRHAMRRARG SGGRFLNTKN VSSSAAAADA  180
APVSSGGGDH GASNKSSSAS EATRVYDDDD DMGAGGGGGG GDFNHAMGHL HSPAFFPSLA  240
AMMDGGGGGE GKWATATPHH GCRVDLLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-19110167361HAPB protein
4g92_A3e-19110167361HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149158RHRHAMRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054540.0AP005454.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0455F03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645550.11e-128nuclear transcription factor Y subunit A-2
TrEMBLA0A0E0EEK10.0A0A0E0EEK1_9ORYZ; Uncharacterized protein
STRINGOMERI07G19370.11e-133(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.38e-26nuclear factor Y, subunit A10