PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G18770.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1025aa MW: 115612 Da PI: 6.8754

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G18770.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.1	3.5e-14	21	73	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+++ + +yp+ e+++e A++++Lt +qV++WF+ rR ke++ OMERI07G18770.3 21 TKKSPLQIQMLERFYSEIQYPQSEDIAEYATSVDLTYNQVRIWFKERRRKERR 73 567899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-14	13	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.803	14	74	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.2E-12	16	78	IPR009057	Homeodomain-like
SMART	SM00389	5.5E-13	16	78	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-11	21	73	IPR001356	Homeobox domain
CDD	cd00086	2.38E-8	21	64	No hit	No description
Pfam	PF15612	1.8E-5	529	560	IPR028942	WHIM1 domain
Pfam	PF15613	6.3E-11	652	723	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1025 aa Download sequence Send to blast
MAAVRKMAAN GLAAKRENTG TKKSPLQIQM LERFYSEIQY PQSEDIAEYA TSVDLTYNQV 60 RIWFKERRRK ERRETESLGA HMEKQLRDKH TLRSQVLFPK DYILRKVFRK DGPPLGSEFD 120 PLPHSAPGHL RDTTDDHFYQ NQRVIKKRKI VEPTTQRSSL PCGDSGPVRK HGAGKGLMTV 180 WHAMYSHSSK IQDGSNFIDE TGCLRSLRPL DDCGRTEDCD DGKLIQVPCS RVTAPKKHPP 240 MECHLSVDES QSPVLQANQV TLVDDEELEL RELQAGPNPL RCSAHLSSSG RHGCPLCKDL 300 LSRFPPSSVK MKQPFSTRPW GSSPEMVKKL FQVREQEFDM NFWIKSLNSL TWVEILRQVL 360 VASGFGSKHH MLNRDFFNKE KNQMVKYGLR PRTLKGELFA LLSKKGSGGL KVSELAKSPE 420 IVDLNISSTE IEQLIYSTLS SDITLFEKIA PSAYRLRVDP RIKGKEDFGS DTEDSGSVDD 480 HSDASSGADE SDDSHEMSFS EHEHRILRRK RKNGHENVNR CSEIDESYSG ERWLLGLMEG 540 EYSDLSIDEK LDCLVALMDV VSGADSAPRL EEPPRVVPSI PRAQPHVSGG KIKKSTRNIC 600 QSSDQCFNAS GSMHGLDSSM HEQSRSLRSR DYVAYSGRND TSTGVAHQPQ VVLLGSDRRY 660 NNYWLFLGPC RADDPGHRRV YFESSEDGHW EVIDSPQELL SLLASLDSRG TREAYLLASM 720 KKRQTCLFEA MKKHYENRDA VQPAMPSDTS HSETSSGDGA SPKLSSGDGA SPTSDIDNAS 780 VPTNPAENMI NASSAIAIEV GRRGDEKILK WERSQTFDKW IWTSFYSCLT AVKCGKKSFK 840 ESLVRCESCH DLYWRDEKHC RICHSTFEVS FDLEERYAIH VATCRDPEDA YDVPNHKVLP 900 SQLQALKAAI HAIEAHMPEA AFAGLWMKSS HKLWVKRLRR TSSLAELLQV LVDFVGAMDE 960 DWLYKSSSSV SFCSYLDDIV IYFQTMPQTT SAVALWVVKL DALITPYLER ADSDRALGEE 1020 NASMR

Sequence ? help Back to Top

Protein Sequence Length: 1025 aa Download sequence Send to blast

MAAVRKMAAN GLAAKRENTG TKKSPLQIQM LERFYSEIQY PQSEDIAEYA TSVDLTYNQV  60
RIWFKERRRK ERRETESLGA HMEKQLRDKH TLRSQVLFPK DYILRKVFRK DGPPLGSEFD  120
PLPHSAPGHL RDTTDDHFYQ NQRVIKKRKI VEPTTQRSSL PCGDSGPVRK HGAGKGLMTV  180
WHAMYSHSSK IQDGSNFIDE TGCLRSLRPL DDCGRTEDCD DGKLIQVPCS RVTAPKKHPP  240
MECHLSVDES QSPVLQANQV TLVDDEELEL RELQAGPNPL RCSAHLSSSG RHGCPLCKDL  300
LSRFPPSSVK MKQPFSTRPW GSSPEMVKKL FQVREQEFDM NFWIKSLNSL TWVEILRQVL  360
VASGFGSKHH MLNRDFFNKE KNQMVKYGLR PRTLKGELFA LLSKKGSGGL KVSELAKSPE  420
IVDLNISSTE IEQLIYSTLS SDITLFEKIA PSAYRLRVDP RIKGKEDFGS DTEDSGSVDD  480
HSDASSGADE SDDSHEMSFS EHEHRILRRK RKNGHENVNR CSEIDESYSG ERWLLGLMEG  540
EYSDLSIDEK LDCLVALMDV VSGADSAPRL EEPPRVVPSI PRAQPHVSGG KIKKSTRNIC  600
QSSDQCFNAS GSMHGLDSSM HEQSRSLRSR DYVAYSGRND TSTGVAHQPQ VVLLGSDRRY  660
NNYWLFLGPC RADDPGHRRV YFESSEDGHW EVIDSPQELL SLLASLDSRG TREAYLLASM  720
KKRQTCLFEA MKKHYENRDA VQPAMPSDTS HSETSSGDGA SPKLSSGDGA SPTSDIDNAS  780
VPTNPAENMI NASSAIAIEV GRRGDEKILK WERSQTFDKW IWTSFYSCLT AVKCGKKSFK  840
ESLVRCESCH DLYWRDEKHC RICHSTFEVS FDLEERYAIH VATCRDPEDA YDVPNHKVLP  900
SQLQALKAAI HAIEAHMPEA AFAGLWMKSS HKLWVKRLRR TSSLAELLQV LVDFVGAMDE  960
DWLYKSSSSV SFCSYLDDIV IYFQTMPQTT SAVALWVVKL DALITPYLER ADSDRALGEE  1020
NASMR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	73	RRRKERRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006657968.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3
Refseq	XP_015695304.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3
TrEMBL	A0A0E0EEF9	0.0	A0A0E0EEF9_9ORYZ; Uncharacterized protein
STRING	OMERI07G19150.1	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	4e-42	Homeodomain-like transcriptional regulator