PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI07G18770.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1099aa MW: 124146 Da PI: 7.0142

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI07G18770.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44	3.8e-14	21	73	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+++ + +yp+ e+++e A++++Lt +qV++WF+ rR ke++ OMERI07G18770.2 21 TKKSPLQIQMLERFYSEIQYPQSEDIAEYATSVDLTYNQVRIWFKERRRKERR 73 567899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-14	13	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.803	14	74	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.2E-12	16	78	IPR009057	Homeodomain-like
SMART	SM00389	5.5E-13	16	78	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-11	21	73	IPR001356	Homeobox domain
CDD	cd00086	2.47E-8	21	64	No hit	No description
Pfam	PF15612	1.9E-5	603	634	IPR028942	WHIM1 domain
Pfam	PF15613	6.8E-11	726	797	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1099 aa Download sequence Send to blast
MAAVRKMAAN GLAAKRENTG TKKSPLQIQM LERFYSEIQY PQSEDIAEYA TSVDLTYNQV 60 RIWFKERRRK ERRETESLGA HMEKQLSARS NGFRCSSSSS RSSTFSRSTM YRNVSLRPED 120 DRYVDKGMSF TGDKHTLRSQ VLFPKDYILR KVFRKDGPPL GSEFDPLPHS APGHLRDTTD 180 DHFYQNQRVI KKRKIVEPTT QRSSLPCGDS GPVRKHGAGK GLMTVWHAMY SHSSKIQDGS 240 NFIDETGCLR SLRPLDDCGR TEDCDDGKLI QVPCSRVTAP KKHPPMECHL SVDESQSPVL 300 QANQVTLVDD EELELRELQA GPNPLRCSAH LSSSGRHGCP LCKDLLSRFP PSSVKMKQPF 360 STRPWGSSPE MVKKLFQVVR FIYNRFGYMD VHPFTFDELA QAFHDKVREQ EFDMNFWIKS 420 LNSLTWVEIL RQVLVASGFG SKHHMLNRDF FNKEKNQMVK YGLRPRTLKG ELFALLSKKG 480 SGGLKVSELA KSPEIVDLNI SSTEIEQLIY STLSSDITLF EKIAPSAYRL RVDPRIKGKE 540 DFGSDTEDSG SVDDHSDASS GADESDDSHE MSFSEHEHRI LRRKRKNGHE NVNRCSEIDE 600 SYSGERWLLG LMEGEYSDLS IDEKLDCLVA LMDVVSGADS APRLEEPPRV VPSIPRAQPH 660 VSGGKIKKST RNICQSSDQC FNASGSMHGL DSSMHEQSRS LRSRDYVAYS GRNDTSTGVA 720 HQPQVVLLGS DRRYNNYWLF LGPCRADDPG HRRVYFESSE DGHWEVIDSP QELLSLLASL 780 DSRGTREAYL LASMKKRQTC LFEAMKKHYE NRDAVQPAMP SDTSHSETSS GDGASPKLSS 840 GDGASPTSDI DNASVPTNPA ENMINASSAI AIEVGRRGDE KILKWERSQT FDKWIWTSFY 900 SCLTAVKCGK KSFKESLVRC ESCHDLYWRD EKHCRICHST FEVSFDLEER YAIHVATCRD 960 PEDAYDVPNH KVLPSQLQAL KAAIHAIEAH MPEAAFAGLW MKSSHKLWVK RLRRTSSLAE 1020 LLQVLVDFVG AMDEDWLYKS SSSVSFCSYL DDIVIYFQTM PQTTSAVALW VVKLDALITP 1080 YLERADSDRA LGEENASMR

Sequence ? help Back to Top

Protein Sequence Length: 1099 aa Download sequence Send to blast

MAAVRKMAAN GLAAKRENTG TKKSPLQIQM LERFYSEIQY PQSEDIAEYA TSVDLTYNQV  60
RIWFKERRRK ERRETESLGA HMEKQLSARS NGFRCSSSSS RSSTFSRSTM YRNVSLRPED  120
DRYVDKGMSF TGDKHTLRSQ VLFPKDYILR KVFRKDGPPL GSEFDPLPHS APGHLRDTTD  180
DHFYQNQRVI KKRKIVEPTT QRSSLPCGDS GPVRKHGAGK GLMTVWHAMY SHSSKIQDGS  240
NFIDETGCLR SLRPLDDCGR TEDCDDGKLI QVPCSRVTAP KKHPPMECHL SVDESQSPVL  300
QANQVTLVDD EELELRELQA GPNPLRCSAH LSSSGRHGCP LCKDLLSRFP PSSVKMKQPF  360
STRPWGSSPE MVKKLFQVVR FIYNRFGYMD VHPFTFDELA QAFHDKVREQ EFDMNFWIKS  420
LNSLTWVEIL RQVLVASGFG SKHHMLNRDF FNKEKNQMVK YGLRPRTLKG ELFALLSKKG  480
SGGLKVSELA KSPEIVDLNI SSTEIEQLIY STLSSDITLF EKIAPSAYRL RVDPRIKGKE  540
DFGSDTEDSG SVDDHSDASS GADESDDSHE MSFSEHEHRI LRRKRKNGHE NVNRCSEIDE  600
SYSGERWLLG LMEGEYSDLS IDEKLDCLVA LMDVVSGADS APRLEEPPRV VPSIPRAQPH  660
VSGGKIKKST RNICQSSDQC FNASGSMHGL DSSMHEQSRS LRSRDYVAYS GRNDTSTGVA  720
HQPQVVLLGS DRRYNNYWLF LGPCRADDPG HRRVYFESSE DGHWEVIDSP QELLSLLASL  780
DSRGTREAYL LASMKKRQTC LFEAMKKHYE NRDAVQPAMP SDTSHSETSS GDGASPKLSS  840
GDGASPTSDI DNASVPTNPA ENMINASSAI AIEVGRRGDE KILKWERSQT FDKWIWTSFY  900
SCLTAVKCGK KSFKESLVRC ESCHDLYWRD EKHCRICHST FEVSFDLEER YAIHVATCRD  960
PEDAYDVPNH KVLPSQLQAL KAAIHAIEAH MPEAAFAGLW MKSSHKLWVK RLRRTSSLAE  1020
LLQVLVDFVG AMDEDWLYKS SSSVSFCSYL DDIVIYFQTM PQTTSAVALW VVKLDALITP  1080
YLERADSDRA LGEENASMR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	73	RRRKERRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646956.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A0E0EEF8	0.0	A0A0E0EEF8_9ORYZ; Uncharacterized protein
STRING	OMERI07G19150.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	6e-84	Homeodomain-like transcriptional regulator