PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI07G18770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 1079aa MW: 122398 Da PI: 7.135 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 44 | 3.8e-14 | 21 | 73 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+++ + +yp+ e+++e A++++Lt +qV++WF+ rR ke++ OMERI07G18770.1 21 TKKSPLQIQMLERFYSEIQYPQSEDIAEYATSVDLTYNQVRIWFKERRRKERR 73 567899*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-14 | 13 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.803 | 14 | 74 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-12 | 16 | 78 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.5E-13 | 16 | 78 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.7E-11 | 21 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.09E-8 | 21 | 64 | No hit | No description |
Pfam | PF15612 | 1.9E-5 | 603 | 634 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 6.6E-11 | 726 | 797 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1079 aa Download sequence Send to blast |
MAAVRKMAAN GLAAKRENTG TKKSPLQIQM LERFYSEIQY PQSEDIAEYA TSVDLTYNQV 60 RIWFKERRRK ERRETESLGA HMEKQLSARS NGFRCSSSSS RSSTFSRSTM YRNVSLRPED 120 DRYVDKGMSF TGDKHTLRSQ VLFPKDYILR KVFRKDGPPL GSEFDPLPHS APGHLRDTTD 180 DHFYQNQRVI KKRKIVEPTT QRSSLPCGDS GPVRKHGAGK GLMTVWHAMY SHSSKIQDGS 240 NFIDETGCLR SLRPLDDCGR TEDCDDGKLI QVPCSRVTAP KKHPPMECHL SVDESQSPVL 300 QANQVTLVDD EELELRELQA GPNPLRCSAH LSSSGRHGCP LCKDLLSRFP PSSVKMKQPF 360 STRPWGSSPE MVKKLFQVVR FIYNRFGYMD VHPFTFDELA QAFHDKVREQ EFDMNFWIKS 420 LNSLTWVEIL RQVLVASGFG SKHHMLNRDF FNKEKNQMVK YGLRPRTLKG ELFALLSKKG 480 SGGLKVSELA KSPEIVDLNI SSTEIEQLIY STLSSDITLF EKIAPSAYRL RVDPRIKGKE 540 DFGSDTEDSG SVDDHSDASS GADESDDSHE MSFSEHEHRI LRRKRKNGHE NVNRCSEIDE 600 SYSGERWLLG LMEGEYSDLS IDEKLDCLVA LMDVVSGADS APRLEEPPRV VPSIPRAQPH 660 VSGGKIKKST RNICQSSDQC FNASGSMHGL DSSMHEQSRS LRSRDYVAYS GRNDTSTGVA 720 HQPQVVLLGS DRRYNNYWLF LGPCRADDPG HRRVYFESSE DGHWEVIDSP QELLSLLASL 780 DSRGTREAYL LASMKKRQTC LFEAMKKHYE NRDAVQPAMP SDTSHSETNI DNASVPTNPA 840 ENMINASSAI AIEVGRRGDE KILKWERSQT FDKWIWTSFY SCLTAVKCGK KSFKESLVRC 900 ESCHDLYWRD EKHCRICHST FEVSFDLEER YAIHVATCRD PEDAYDVPNH KVLPSQLQAL 960 KAAIHAIEAH MPEAAFAGLW MKSSHKLWVK RLRRTSSLAE LLQVLVDFVG AMDEDWLYKS 1020 SSSVSFCSYL DDIVIYFQTM PQTTSAVALW VVKLDALITP YLERADSDRA LGEENASMR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 73 | RRRKERRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646956.1 | 0.0 | homeobox-DDT domain protein RLT3 isoform X1 | ||||
TrEMBL | A0A0E0EEF7 | 0.0 | A0A0E0EEF7_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI07G19150.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 7e-84 | Homeodomain-like transcriptional regulator |