PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G18590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 337aa    MW: 36518.9 Da    PI: 4.3568
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G18590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-19114164155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+G+r+++ +g+W+AeIrdp++     r++lg+fgtaeeAa a++  +++++g
  OMERI07G18590.1 114 TRYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFGTAEEAAMAYDVEARRIRG 164
                      68********.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.07E-30114173No hitNo description
PfamPF008472.2E-12114164IPR001471AP2/ERF domain
PROSITE profilePS5103223.749115172IPR001471AP2/ERF domain
SMARTSM003803.9E-35115178IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21115173IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-31115173IPR001471AP2/ERF domain
PRINTSPR003673.4E-11116127IPR001471AP2/ERF domain
PRINTSPR003673.4E-11138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MCGGSILGDL HLPVRRTVNA RDLWGDAGKG RDGGDGLKKR KGSSWDFDVD CDDDDDDDDD  60
FEADFEEFED DYGDDDDDVV GFGHDDQESD MNGLKLAGFS ATKLGLGGSR KRKTRYRGIR  120
QRPWGKWAAE IRDPRKGVRV WLGTFGTAEE AAMAYDVEAR RIRGKKAKVN FPDAAAAAAP  180
KRPRRSSASA KPQQQKARSS SSSLVSLNAS DGGVSKSNNN RVSSAGSSTD AATAAIAIDD  240
GVKLELLSET DPSPPMAAAA AWLDAFELND LDGSRCKDNA AVADEFAFYD DPSYMQLGYQ  300
LDQGNSYENI DALFGGEAVN IGGLWSFDDM PMEFRAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20116172663ATERF1
3gcc_A2e-20116172663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113SRKRKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0610470.0AK061047.1 Oryza sativa Japonica Group cDNA clone:006-205-F01, full insert sequence.
GenBankAK0670600.0AK067060.1 Oryza sativa Japonica Group cDNA clone:J013090P08, full insert sequence.
GenBankAK1093600.0AK109360.2 Oryza sativa Japonica Group cDNA clone:006-206-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647923.11e-164ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0EED40.0A0A0E0EED4_9ORYZ; Uncharacterized protein
STRINGOMERI07G18980.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145602123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-33ethylene-responsive element binding protein