PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G17720.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 431aa    MW: 46700.5 Da    PI: 6.505
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G17720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.8e-30169225259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg e+p+sYY+Ct+ +C v+k+ve+sa d+++v+i+Y+g+H+he
  OMERI07G17720.1 169 DDGYNWRKYGQKAVKGGEYPKSYYKCTHLNCLVRKNVEHSA-DGRIVQIIYRGQHTHE 225
                      8****************************************.***************8 PP
2WRKY103.31.4e-32337395159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC vkk+vers e+p++v++tYeg+H h+
  OMERI07G17720.1 337 LDDGYRWRKYGQKVVKGNPYPRSYYKCTYLGCDVKKQVERSVEEPNAVITTYEGKHIHD 395
                      59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-27163227IPR003657WRKY domain
SuperFamilySSF1182901.44E-24166227IPR003657WRKY domain
SMARTSM007747.5E-33168226IPR003657WRKY domain
PROSITE profilePS5081123.376169227IPR003657WRKY domain
PfamPF031061.2E-22169225IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-34324397IPR003657WRKY domain
SuperFamilySSF1182903.53E-29330397IPR003657WRKY domain
PROSITE profilePS5081134.762332397IPR003657WRKY domain
SMARTSM007742.3E-38337396IPR003657WRKY domain
PfamPF031064.1E-25338394IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAAARRXXXX XXXXXXXXXX GSLWGPPPPP PPSSGGGIPQ LPAAAVEGLP FSSSSGGGGW  60
PPPPLSGTAV LLGYPQGNFE TFPQQDLVPL TAQEVHSKCI TFSRAENPSF IPLATSALVS  120
QHTGSSSVNV TPLQEVLTSP SQISNVNTES IGVLQGLPAS SIVLDRPADD GYNWRKYGQK  180
AVKGGEYPKS YYKCTHLNCL VRKNVEHSAD GRIVQIIYRG QHTHERPSKR RFKDCGGISD  240
DLDDFSGTTG TSVRSQPDCD DYCRKPIIPS GTMVAPLVKQ IEDGDDQLSG SSDNQDEHDD  300
EVRTADGASG DASANERNVP APGQKIIVST TSEIDLLDDG YRWRKYGQKV VKGNPYPRSY  360
YKCTYLGCDV KKQVERSVEE PNAVITTYEG KHIHDVPAAR NKSHVVANAS LLQNIKSNTY  420
CTEQSYTTIT C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-34169398878Probable WRKY transcription factor 4
2lex_A4e-34169398878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418470.0AY341847.1 Oryza sativa (japonica cultivar-group) WRKY6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646950.20.0probable WRKY transcription factor 3
TrEMBLA0A0E0EDZ80.0A0A0E0EDZ8_9ORYZ; Uncharacterized protein
STRINGORGLA07G0160900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-76WRKY DNA-binding protein 3