PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI07G17270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 22549.5 Da PI: 7.933 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.6 | 1.9e-28 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r ++++sl+yeA r+ +Pv Gavg+++ ++++l+q OMERI07G17270.1 2 SCNGCRVLRKGCSEGCVLRPCLqgidgAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRAAVFQSLLYEAAGRTINPVGGAVGLLSGGSWHLCQ 95 6*********************9999888899************************************************************** PP DUF260 90 lkaelal 96 ++++++l OMERI07G17270.1 96 AAVDTVL 102 *999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.183 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.9E-25 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEGCVLR PCLQGIDGAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR 60 AAVFQSLLYE AAGRTINPVG GAVGLLSGGS WHLCQAAVDT VLRGGGIQPL PDQVDAAAGG 120 RDVFASTARR AVGGCSTFST AKRSTTKNPG TPHDAAAVAP QPEPSCDLGL WLSPGSPPAP 180 GDRRSGGRRA DTPSMNSEGS VTTCGVVGGG EREPELLNLF V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069813 | 0.0 | AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647207.1 | 1e-146 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 2e-66 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A0E0EDU3 | 1e-157 | A0A0E0EDU3_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI07G17600.1 | 1e-158 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 5e-59 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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