PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G16720.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 243aa    MW: 26337.3 Da    PI: 7.3032
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G16720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.5e-1963116356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++++eq+e Le  F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  OMERI07G16720.1  63 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHK 116
                      45589***********************************************99 PP
2HD-ZIP_I/II116.31.8e-3763153292
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      kkrrls+eqv++LE sF+ee+kLe+ rKv+la+eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da   ++++Le+ev +L+e+l 
  OMERI07G16720.1  63 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLV 153
                      9**************************************************************************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.29358118IPR001356Homeobox domain
SuperFamilySSF466898.77E-1759117IPR009057Homeodomain-like
SMARTSM003899.7E-1761122IPR001356Homeobox domain
CDDcd000861.84E-1463118No hitNo description
PfamPF000464.1E-1663116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-1863116IPR009057Homeodomain-like
PRINTSPR000311.8E-58998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000311.8E-598114IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDRYGEKQQQ QQMFASYVDA SLLAASGEVQ GERPRARRRR RHGARYGGGG GGGGGEVDGG  60
DPKKRRLSDE QVEMLELSFR EERKLETGRK VHLASELGLD PKQVAVWFQN RRARHKSKLL  120
EEEFSKLKHA HDAAILHKCH LENEVLRLKE RLVVAEEEVR RLRSAAGSHT ASGEGGDIMG  180
LGGGACVAGS PSSSFSTGTC QPPSFGGGGG GDHLGDDDLV YVPEYGGYAG NSVAEWFSLY  240
GLI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218890.0AK121889.1 Oryza sativa Japonica Group cDNA clone:J033105B17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646179.11e-128homeobox-leucine zipper protein HOX14
SwissprotQ7XI851e-129HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A0E0EDM61e-174A0A0E0EDM6_9ORYZ; Uncharacterized protein
STRINGOMERI07G17060.11e-175(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-31homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]