PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G15720.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 426aa    MW: 45162.4 Da    PI: 7.3239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G15720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.3e-54291571128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++
  OMERI07G15720.1  29 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-TIIAEVDLYKFDPWELPEKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMA 121
                      79****************************.89***************999999**************************************** PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  ++e+vg+kk Lvfy+g+ pkg+kt+W+mheyrl
  OMERI07G15720.1 122 SgsNREKVGVKKALVFYRGKPPKGVKTNWIMHEYRL 157
                      9878889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-6425202IPR003441NAC domain
PROSITE profilePS5100561.65529202IPR003441NAC domain
PfamPF023659.0E-2830157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MESPDSSSGS APPRVLRRQQ QQPGSAPELP PGFRFHPTDE ELVVHYLKKK AASVPLPVTI  60
IAEVDLYKFD PWELPEKASF GEQEWYFFSP RDRKYPNGAR PNRAATSGYW KATGTDKPIM  120
ASGSNREKVG VKKALVFYRG KPPKGVKTNW IMHEYRLTDT SSSAATAAVA TTRRPPPPIT  180
GGSRGAVSLR LDDWVLCRIY KKTNKAGAGQ RSMECEDSVE DAVAAYAPSS QQHATAAAGM  240
AGSDGAGGVA AAHGGDYSSL LHHDSHEDNF LVNGLLTAED AAGLSTGASS LSQLAAAARA  300
AATPCDATKQ LLAPSPTPFN WFEAFLPRAK EFPGGLNRSS RDIGDMSLSS TVDRSLSEAG  360
AVAIDTGDAA NGANTMPAFI NPLGVGATYQ QHQAIMGASL PSESAAAAAA CNFQHPFQLS  420
RVNWDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-73192067169NO APICAL MERISTEM PROTEIN
1ut4_B6e-73192067169NO APICAL MERISTEM PROTEIN
1ut7_A6e-73192067169NO APICAL MERISTEM PROTEIN
1ut7_B6e-73192067169NO APICAL MERISTEM PROTEIN
3swm_A6e-731920610172NAC domain-containing protein 19
3swm_B6e-731920610172NAC domain-containing protein 19
3swm_C6e-731920610172NAC domain-containing protein 19
3swm_D6e-731920610172NAC domain-containing protein 19
3swp_A6e-731920610172NAC domain-containing protein 19
3swp_B6e-731920610172NAC domain-containing protein 19
3swp_C6e-731920610172NAC domain-containing protein 19
3swp_D6e-731920610172NAC domain-containing protein 19
4dul_A6e-73192067169NAC domain-containing protein 19
4dul_B6e-73192067169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634060.0AK063406.1 Oryza sativa Japonica Group cDNA clone:001-115-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645677.10.0NAC domain-containing protein 10
SwissprotA2YMR00.0NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLA0A0E0ED760.0A0A0E0ED76_9ORYZ; Uncharacterized protein
STRINGOMERI07G15980.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.14e-89NAC domain containing protein 25