PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G15550.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 772aa    MW: 84981.9 Da    PI: 8.3954
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G15550.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.56e-19270369198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  OMERI07G15550.2 270 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 361
                      89**************************777788889***************9989999999***9.********************987.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  OMERI07G15550.2 362 KLVMGFRK 369
                      77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.40.330.101.7E-29266371IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-19267369IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-22268369No hitNo description
PROSITE profilePS5086311.251270371IPR003340B3 DNA binding domain
PfamPF023626.2E-16270369IPR003340B3 DNA binding domain
SMARTSM010195.7E-21270370IPR003340B3 DNA binding domain
PROSITE profilePS5105014.17525575IPR011124Zinc finger, CW-type
PfamPF074963.8E-11530572IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP PPHPHPQQPP QAVVSVGVGP  60
PPPTPQHQQQ QQQQGPPGHA PPQQRPRICF NAHCKDPKSD GPRRRGWRLR NGDFAELCDR  120
CYHSFEHGGF CETFHLEVAG WRNCESCGKR LHCGCIVSVH AFVHLDAGGV ECVMCARKSH  180
AAMAPTNGPK DHIRIGPTQQ QQQMASSSLQ KQFYSHSVID NDFQAQLRNG RPRMDAKARS  240
QLLPRYWPRI TDQELQHLSG DSNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAYFPAIS  300
QAEGLPLKVQ DATGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE  360
GKLVMGFRKA TNLSAEQDQP TKPANGVPPP PEANNKVVVP DSSPNAAVPR PIKVNTESKS  420
SSPVEQATAC KIDKGALPQK EGPGTSSSSP LTVKRKATSV GPKIKRFRMD SEESMELKIT  480
WEEAQELLRP PPKAPSIVVV DGHEFEEYEE PPILGRRTYF VTDQSGENHQ WAQCEDCSKW  540
RKLPVDALLP SKWTCSDNKW DSERSSCDSA QEINMEELGE MIPIKPGAAK KTKGKVDTDN  600
IDVSDGLDTL ANLAILGEGE SLPSQPTTRH PRHRPGCSCI VCIQPPSGKG PKHKQTCTCN  660
VCMTVRRRFR TLMMRREKRQ QSEKDSGVPR KREPGQSSEP VPQSGSGAHP TSTSSPPQRA  720
DTNGEGPEDM SIDNKRTSSP VKNQIDLNSQ PEREDEQSPK SDATRLLRDN PT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-652483722126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411990.0AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647112.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0E0ED450.0A0A0E0ED45_9ORYZ; Uncharacterized protein
STRINGORUFI07G19520.10.0(Oryza rufipogon)
STRINGONIVA07G17160.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-144HSI2-like 1