PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G12270.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 215aa    MW: 21898 Da    PI: 10.8356
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G12270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.72.5e-41109186178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqve+C +dlsea +y+rrhkvC++hsk pvvlv+gl+qrfCqqCsrfhel+efD++krsCrrrLa+hnerrrk++a
  OMERI07G12270.1 109 RCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSAA 186
                      6**************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-33103171IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.351107184IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.0E-38108188IPR004333Transcription factor, SBP-box
PfamPF031101.2E-31110183IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDRKDKARKN SSSSSSSAAS MAALAAAAAA GDGGAALPSP MEEDKKPRLV ASSLAPVAGG  60
GGGGGSSSSA AAAGASSSSS SSSVATAARR GAGRAGGGAP SGGGGGGPRC QVERCGVDLS  120
EAGRYNRRHK VCQTHSKEPV VLVAGLRQRF CQQCSRFHEL TEFDDAKRSC RRRLAGHNER  180
RRKSAADTAH GENCRHADQD GRNHQGTGNP PFQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-35101183284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8995810.0KT899581.1 Oryza sativa Japonica Group isolate Dongjing GLW7 (GLW7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645415.12e-85squamosa promoter-binding-like protein 13
SwissprotQ6Z4612e-86SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A0E0EBP71e-149A0A0E0EBP7_9ORYZ; Uncharacterized protein
STRINGOMERI07G12350.11e-149(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-37squamosa promoter binding protein-like 4