PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI07G11550.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 372aa MW: 42045.4 Da PI: 11.4269 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 163.5 | 5.9e-51 | 237 | 364 | 12 | 139 |
Whirly 12 kavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGl 105 a+r+ + +sg+ k+ ++G++ll++a+a+a+r+ydW +kq+f+ls+ e+++l+ l++ +sceffhdp+++ s+eGkvrk+lkveP pdG OMERI07G11550.7 237 GARRTRLPPRKSGAYKVVKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEMGSLLTLGPTDSCEFFHDPFKGRSDEGKVRKVLKVEPTPDGNSR 330 57788888899*********************************************************************************** PP Whirly 106 fvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 f+nlsv+n l++ +e++++P++k+efav+ s ++ OMERI07G11550.7 331 FFNLSVQNRLLNIDENIYIPITKGEFAVIVSTFN 364 *****************************99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08536 | 2.2E-49 | 244 | 361 | IPR013742 | Plant transcription factor |
SuperFamily | SSF54447 | 3.92E-53 | 245 | 372 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene3D | G3DSA:2.30.31.10 | 1.1E-57 | 246 | 372 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0043531 | Molecular Function | ADP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 372 aa Download sequence Send to blast |
MVIKSSGWSA RALYCLLSAP GYPRLVTVSS SLTVPLVITN IWARIHLNGL VAQPRSSVAS 60 TFLGWLARTT SLEEFASSVK PTRRNNRSHS NWLSGSTSTL VDHPHFDQPR CFPSNSQSLF 120 ILWWCVCDNG NLVGKSMKRR YDTIVIVTAW SIWKERNNRV LNNRSKSWAE VTAAAAEELK 180 KQQYWRSARG KANRVRLPLR RVPSLPPWPP PPSPPSATRT TSTPVPRRLR RRATGTGARR 240 TRLPPRKSGA YKVVKEGFVL LQFAPAVATR QYDWTRKQVF SLSVWEMGSL LTLGPTDSCE 300 FFHDPFKGRS DEGKVRKVLK VEPTPDGNSR FFNLSVQNRL LNIDENIYIP ITKGEFAVIV 360 STFNYIIPHL MG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koq_A | 4e-69 | 247 | 372 | 35 | 160 | Single-stranded DNA-binding protein WHY3, chloroplastic |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT836194 | 0.0 | CT836194.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA048P18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0EBE0 | 0.0 | A0A0E0EBE0_9ORYZ; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02740.2 | 4e-70 | ssDNA-binding transcriptional regulator |