PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G11550.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 343aa    MW: 39186.2 Da    PI: 10.9195
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G11550.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly163.75e-5120833512139
           Whirly  12 kavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGl 105
                       a+r+ +   +sg+ k+ ++G++ll++a+a+a+r+ydW +kq+f+ls+ e+++l+ l++ +sceffhdp+++ s+eGkvrk+lkveP pdG   
  OMERI07G11550.5 208 GARRTRLPPRKSGAYKVVKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEMGSLLTLGPTDSCEFFHDPFKGRSDEGKVRKVLKVEPTPDGNSR 301
                      57788888899*********************************************************************************** PP

           Whirly 106 fvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      f+nlsv+n l++ +e++++P++k+efav+ s ++
  OMERI07G11550.5 302 FFNLSVQNRLLNIDENIYIPITKGEFAVIVSTFN 335
                      *****************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF085361.9E-49215332IPR013742Plant transcription factor
SuperFamilySSF544473.3E-53216343IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.108.9E-58217343IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVIKSSGWSA RALYCLLSAP GYPRLVTVSS SLTVPDLDSH ELEKCAFRRA PPERPKQAQL  60
YGLQVIWTLN EHWKQHVDQP RCFPSNSQSL FILWWCVCDN GNLVGKSMKR RYDTIVIVTA  120
WSIWKERNNR VLNNRSKSWA EVTAAAAEEL KKQQYWRSAR GKANRVRLPL RRVPSLPPWP  180
PPPSPPSATR TTSTPVPRRL RRRATGTGAR RTRLPPRKSG AYKVVKEGFV LLQFAPAVAT  240
RQYDWTRKQV FSLSVWEMGS LLTLGPTDSC EFFHDPFKGR SDEGKVRKVL KVEPTPDGNS  300
RFFNLSVQNR LLNIDENIYI PITKGEFAVI VSTFNYIIPH LMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4koq_A4e-6921834335160Single-stranded DNA-binding protein WHY3, chloroplastic
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8361940.0CT836194.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA048P18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0EBD80.0A0A0E0EBD8_9ORYZ; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.23e-70ssDNA-binding transcriptional regulator