PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G11550.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 373aa    MW: 42558.1 Da    PI: 10.8666
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G11550.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly190.72.4e-592273651139
           Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 
                      s+yk+kaa++ +++ p+f+ ldsg+ k+ ++G++ll++a+a+a+r+ydW +kq+f+ls+ e+++l+ l++ +sceffhdp+++ s+eGkvrk+l
  OMERI07G11550.2 227 SIYKGKAAMSFDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEMGSLLTLGPTDSCEFFHDPFKGRSDEGKVRKVL 320
                      7********************************************************************************************* PP

           Whirly  95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      kveP pdG   f+nlsv+n l++ +e++++P++k+efav+ s ++
  OMERI07G11550.2 321 KVEPTPDGNSRFFNLSVQNRLLNIDENIYIPITKGEFAVIVSTFN 365
                      ****************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.9E-72218373IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.88E-67219373IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.6E-58228362IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVIKSSGWSA RALYCLLSAP GYPRLVTVSS SLTVPDLDSH ELEKCAFRRA PPERPKQAQL  60
YGLQVIWTLN EHWKQHVDQP RCFPSNSQSL FILWWCVCDN GNLVGKSMKR RYDTIVIVTA  120
WSIWKERNNR VLNNRSKSWA EVTAAAAEEL KKQQYWRSAR GKANRVRLPL RRVPSLPPWP  180
PPPSPPSATR TTSTPVPRRL RRRATGTGAR RTRLPPRKNG RVFSTYSIYK GKAAMSFDPR  240
PPQFVPLDSG AYKVVKEGFV LLQFAPAVAT RQYDWTRKQV FSLSVWEMGS LLTLGPTDSC  300
EFFHDPFKGR SDEGKVRKVL KVEPTPDGNS RFFNLSVQNR LLNIDENIYI PITKGEFAVI  360
VSTFNYIIPH LMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4koq_A1e-812213738160Single-stranded DNA-binding protein WHY3, chloroplastic
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212221RLPPRKNGRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8361940.0CT836194.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA048P18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0EBD40.0A0A0E0EBD4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0EBD60.0A0A0E0EBD6_9ORYZ; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.23e-82ssDNA-binding transcriptional regulator