PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G11550.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 812aa    MW: 93374.7 Da    PI: 10.4199
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G11550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly188.79.7e-596668031138
           Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 
                      s+yk+kaa++ +++ p+f+ ldsg+ k+ ++G++ll++a+a+a+r+ydW +kq+f+ls+ e+++l+ l++ +sceffhdp+++ s+eGkvrk+l
  OMERI07G11550.1 666 SIYKGKAAMSFDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEMGSLLTLGPTDSCEFFHDPFKGRSDEGKVRKVL 759
                      79******************************************************************************************** PP

           Whirly  95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                      kveP pdG   f+nlsv+n l++ +e++++P++k+efav+ s +
  OMERI07G11550.1 760 KVEPTPDGNSRFFNLSVQNRLLNIDENIYIPITKGEFAVIVSTF 803
                      ****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF009313.6E-11250IPR002182NB-ARC
Gene3DG3DSA:3.80.10.107.9E-16123251IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520474.79E-26134251No hitNo description
SuperFamilySSF520474.79E-26299439No hitNo description
Gene3DG3DSA:3.80.10.107.9E-16304436IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.30.31.108.2E-72657812IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544478.63E-67658812IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.1E-57667801IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MRQVLALSYN YLPSHLKPCF LYLSIFPEDF EIQRKRLVYR WIAEGFIRAR KGVSIMDVAI  60
KYFNELINRS LIQPSRVNIS GTIKSCRVHD IMRDIMISIS REEKFMIKKL VRWRKNIRHV  120
AYYNSNSSEI AMDLNQVRSL TVFCERPKEL TPLLCSPQVR MLRVLDFQGV RFGMTQKEMD  180
NIGSVLHLKY MNIRCDYDFP NNFNGHSKIY RIPRSIGKLQ GLRVLDISNT YITSLPTEIC  240
KLRSLNVLRC TREERYKFFD PSKPIQCLFA LSCIPVTMSL ADSDQRREVT AELHMACSSC  300
WFRTNGVRVP RGIGNLKQLQ ELVGMDISQT SSKAVKELGE LSRLRKLRLE TNGATERKCK  360
MLCAAIENLS SLGYLRIRAF RFTDCSLTSL EWLHSISSPP PFLKSFTLFG CIKEIDIGWL  420
RELTHLVKIE LGGSELKEAM VIKSSGWSAR ALYCLLSAPG YPRLVTVSSS LTVPDLDSHE  480
LEKCAFRRAP PERPKQAQLY GLQVIWTLNE HWKQHVDQPR CFPSNSQSLF ILWWCVCDNG  540
NLVGKSMKRR YDTIVIVTAW SIWKERNNRV LNNRSKSWAE VTAAAAEELK KQQYWRSARG  600
KANRVRLPLR RVPSLPPWPP PPSPPSATRT TSTPVPRRLR RRATGTGARR TRLPPRKNGR  660
VFSTYSIYKG KAAMSFDPRP PQFVPLDSGA YKVVKEGFVL LQFAPAVATR QYDWTRKQVF  720
SLSVWEMGSL LTLGPTDSCE FFHDPFKGRS DEGKVRKVLK VEPTPDGNSR FFNLSVQNRL  780
LNIDENIYIP ITKGEFAVIV STFNYIIPHL MG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4koq_A4e-786608128160Single-stranded DNA-binding protein WHY3, chloroplastic
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1651660RLPPRKNGRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034870.0AP003487.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20.
GenBankAP0037670.0AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644063.10.0putative disease resistance RPP13-like protein 3
RefseqXP_015644064.10.0putative disease resistance RPP13-like protein 3
RefseqXP_015644065.10.0putative disease resistance RPP13-like protein 3
RefseqXP_015644066.10.0putative disease resistance RPP13-like protein 3
RefseqXP_015644067.10.0putative disease resistance RPP13-like protein 3
RefseqXP_015644068.10.0putative disease resistance RPP13-like protein 3
RefseqXP_025882084.10.0putative disease resistance RPP13-like protein 3
TrEMBLA0A0E0EBD40.0A0A0E0EBD4_9ORYZ; Uncharacterized protein
STRINGOMERI07G11630.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.26e-78ssDNA-binding transcriptional regulator