PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G10400.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 562aa    MW: 60130.3 Da    PI: 3.9806
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G10400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.11.2e-2581421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dke 91 
                      lppG+rF+P d+elv++yL +++++++l+l+  i+e+d +++ Pw+L + +  + +e +fF++++ k+ +gkr++r +   g+W+ +    d e
  OMERI07G10400.1   8 LPPGVRFDPGDDELVSRYLLRRLRKQPLPLHGLIHEADPLSAPPWKLLADHGPGGDEAFFFAEARAKNVKGKRQKRtVEGGGFWQGQRVciDGE 101
                      79****************************999**************877777889********************555599**9665433444 PP

              NAM  92 vlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       l+       + e  + k +L f+ ++ ++g ++ Wvmhey++
  OMERI07G10400.1 102 RLRVpggdggGLEIEWRKYMLSFF-AEGERG-SSGWVMHEYAI 142
                      333356665333336777788898.455554.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-313161IPR003441NAC domain
PROSITE profilePS5100528.9238161IPR003441NAC domain
PfamPF023651.4E-159141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MAAAAAGLPP GVRFDPGDDE LVSRYLLRRL RKQPLPLHGL IHEADPLSAP PWKLLADHGP  60
GGDEAFFFAE ARAKNVKGKR QKRTVEGGGF WQGQRVCIDG ERLRVPGGDG GGLEIEWRKY  120
MLSFFAEGER GSSGWVMHEY AITAPADVAS SPIRLYRVRF SGHGKKRKRE PELLGARVHD  180
DDVDGGERAA PRRAVAETAL FEQPSAVDLP PGDADCTESA DQSFSGAIEP VFHDLPDMMP  240
EQADAGDTAE TTAAVLNQNY SMASCDFDFP ESIDFTAGAH DSGMERAVPW TPMSETALFE  300
QQGSPLAPAA VLDLPPGNAD FADHQSSYGV IDPAFCDLPD MTVLTPEQPD AGGGAETTAA  360
VVFEQPVPPL AADGANQGSY GVIDPVFRDL ADLVVLPPEQ ADAMDREAAP AWCDFDFPES  420
IDEALSYIDF TAGAHTDNDG GVERPVPETA MFEQPASPPQ HDPLLACAAV VDADQSSHDR  480
ADLTVLPPEQ ADTGGGAEAT AAAVNLMDKQ KYSSSVDGEA ALAWCDSDFP ESIDEVLSYI  540
DFSNDDTSCI DFSMDDLFDL AD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013010.0AK101301.1 Oryza sativa Japonica Group cDNA clone:J033033K06, full insert sequence.
GenBankAP0056410.0AP005641.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645973.10.0uncharacterized protein LOC107275504
TrEMBLA0A0E0EAV20.0A0A0E0EAV2_9ORYZ; Uncharacterized protein
STRINGOMERI07G10380.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15243914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-09NAC domain containing protein 47