PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI07G09690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 27190.9 Da PI: 10.2299 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.7e-16 | 29 | 73 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd +l ++ k+ G ++W+++ar m+ +R++ +c++rw+ +l OMERI07G09690.1 29 AWTPEEDARLQRLAKENGFRRWSRVARSMP-RRSARSCRDRWRHHL 73 7*****************************.***********9886 PP | |||||||
2 | Myb_DNA-binding | 24 | 8.8e-08 | 116 | 159 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+ +d+ l++++ +lG + Wk I r + gRt k+rw+ ++ OMERI07G09690.1 116 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 159 79****************99.********9.***********9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.084 | 22 | 77 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-13 | 26 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.97E-13 | 29 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 29 | 91 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.39E-18 | 29 | 96 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-14 | 29 | 72 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.61E-13 | 97 | 160 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-4 | 98 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 8.828 | 109 | 163 | IPR017930 | Myb domain |
SMART | SM00717 | 8.4E-4 | 113 | 161 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.74E-4 | 116 | 158 | No hit | No description |
Pfam | PF00249 | 7.5E-6 | 116 | 158 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-8 | 121 | 158 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MDQEVIMATP PLTPPPRARC VVRLKLPPAW TPEEDARLQR LAKENGFRRW SRVARSMPRR 60 SARSCRDRWR HHLARDVYHR PFTARDDDEL LRLHYXARSC RDRWRHHLAR DVYHRPFTAR 120 DDDELLRLHY RLGDRWKEIG RAVYGRTSRV MKHRWRELRR GGFLVAAARK EQAIDMVERE 180 VEESADQSLP APELQPSLAD ALASSFGCCI PAHDHAMDPL AGSLALGFAC MVV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-19 | 30 | 160 | 9 | 156 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-19 | 30 | 160 | 9 | 156 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP005200 | 1e-152 | AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01. | |||
GenBank | AP014963 | 1e-152 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645964.1 | 1e-110 | transcription factor MYB73 | ||||
TrEMBL | A0A0E0EAJ3 | 1e-165 | A0A0E0EAJ3_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI07G09650.1 | 1e-166 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23290.1 | 8e-18 | myb domain protein 70 |