PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI07G09670.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 255aa MW: 28702.9 Da PI: 4.8263 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.9 | 5.3e-21 | 72 | 123 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le++Fe++ y+ ++r eLAkklg++erqVk+WFqNrR+++k OMERI07G09670.4 72 KRHTDDQIKHLESVFERCTYLGGNQRVELAKKLGMEERQVKFWFQNRRTRKK 123 579***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-21 | 61 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.827 | 65 | 125 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.17E-18 | 67 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-17 | 67 | 129 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.91E-19 | 69 | 123 | No hit | No description |
Pfam | PF00046 | 2.3E-18 | 72 | 123 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 2.1E-6 | 96 | 105 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 100 | 123 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.1E-6 | 105 | 121 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVCLGCNTLV KSNQLTMDNG SQQESSDLHV HHLPIASVIG VEDRTEEADD AAVDYHDDGG 60 EGQDEVSNKR MKRHTDDQIK HLESVFERCT YLGGNQRVEL AKKLGMEERQ VKFWFQNRRT 120 RKKMHDERQE SMWLQEENDV LHAENKVLKE AIWANICFTC GSPVVPAIPT VHHRYLSFQN 180 MRLDDELQHA TAVFNMVAQD ADVGLPPVFP LTDVSPLPQF GFVTGNNQTS LVIDPPSPSQ 240 SENQVSTESA NSTST |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004298 | 0.0 | AP004298.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0409D09. | |||
GenBank | AP005690 | 0.0 | AP005690.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0052I14. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0EAJ1 | 0.0 | A0A0E0EAJ1_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI07G09630.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 8e-32 | homeodomain GLABROUS 1 |