PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI07G09670.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 263aa MW: 29575.9 Da PI: 4.9341 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.9 | 5.6e-21 | 80 | 131 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q++ Le++Fe++ y+ ++r eLAkklg++erqVk+WFqNrR+++k OMERI07G09670.3 80 KRHTDDQIKHLESVFERCTYLGGNQRVELAKKLGMEERQVKFWFQNRRTRKK 131 579***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-21 | 69 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.827 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-17 | 75 | 137 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.21E-18 | 75 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.76E-19 | 77 | 131 | No hit | No description |
Pfam | PF00046 | 2.5E-18 | 80 | 131 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 2.2E-6 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.2E-6 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 263 aa Download sequence Send to blast |
MSDAKKNTLN CLGCNTLVKS NQLTMDNGSQ QESSDLHVHH LPIASVIGVE DRTEEADDAA 60 VDYHDDGGEG QDEVSNKRMK RHTDDQIKHL ESVFERCTYL GGNQRVELAK KLGMEERQVK 120 FWFQNRRTRK KMHDERQESM WLQEENDVLH AENKVLKEAI WANICFTCGS PVVPAIPTVH 180 HRYLSFQNMR LDDELQHATA VFNMVAQDAD VGLPPVFPLT DVSPLPQFGF VTGNNQTSLV 240 IDPPSPSQSE NQVSTESANS TST |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004298 | 0.0 | AP004298.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0409D09. | |||
GenBank | AP005690 | 0.0 | AP005690.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0052I14. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0EAJ0 | 0.0 | A0A0E0EAJ0_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI07G09630.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61150.1 | 1e-31 | homeodomain GLABROUS 1 |