PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G09670.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 291aa    MW: 32753.7 Da    PI: 4.9665
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G09670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.4e-2195146556
                      SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       ++t++q++ Le++Fe++ y+  ++r eLAkklg++erqVk+WFqNrR+++k
  OMERI07G09670.1  95 KRHTDDQIKHLESVFERCTYLGGNQRVELAKKLGMEERQVKFWFQNRRTRKK 146
                      579***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-2084146IPR009057Homeodomain-like
PROSITE profilePS5007116.58488148IPR001356Homeobox domain
SuperFamilySSF466891.96E-1890146IPR009057Homeodomain-like
SMARTSM003891.1E-1890152IPR001356Homeobox domain
CDDcd000863.15E-1992146No hitNo description
PfamPF000462.8E-1895146IPR001356Homeobox domain
PRINTSPR000312.6E-6119128IPR000047Helix-turn-helix motif
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PRINTSPR000312.6E-6128144IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSDAKKNTLN IMACLAECHR YRCASMQKDV IHSIPDQLTM DNGSQQESSD LHVHHLPIAS  60
VIGVEDRTEE ADDAAVDYHD DGGEGQDEVS NKRMKRHTDD QIKHLESVFE RCTYLGGNQR  120
VELAKKLGME ERQVKFWFQN RRTRKKVIII QGGIAILDMM HDERQESMWL QEENDVLHAE  180
NKVLKEAIWA NICFTCGSPV VPAIPTVHHR YLSFQNMRLD DELQHATAVF NMVAQDADVG  240
LPPVFPLTDV SPLPQFGFVT GNNQTSLVID PPSPSQSENQ VSTESANSTS T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042980.0AP004298.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0409D09.
GenBankAP0056900.0AP005690.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0052I14.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0EAI80.0A0A0E0EAI8_9ORYZ; Uncharacterized protein
STRINGOMERI07G09630.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149301619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.16e-29homeodomain GLABROUS 1