PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G08410.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 531aa    MW: 56396.7 Da    PI: 3.8374
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G08410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.51.2e-23111471128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk...dk 90 
                      lp G++F+Ptd elv ++L ++++gk+l+l+ vi e+d ++v Pw+L ++ +++ +e +fF++++ k+ +g+r++r +   g W+ +      +
  OMERI07G08410.1  11 LPLGLKFDPTDGELVGRFLLRRLQGKPLPLNGVILEADPLSVPPWKLLAE-HGRGDEGFFFAEARAKNGKGSRQKRtVEGGGLWQGQRVcvdGE 103
                      699***************************99***************744.4567799******************4455899*9665422222 PP

              NAM  91 evlsk.......kgel...vglkktLvfykgrapkgektdWvmheyrl 128
                      ++l+           +    + k +L f    + ++ ++ Wvmhey++
  OMERI07G08410.1 104 KLLVPdggggggV--EveiAWRKYMLSFV--AEGESASSGWVMHEYAV 147
                      3333356665441..15547777788888..4455568********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-298166IPR003441NAC domain
PROSITE profilePS5100526.79811166IPR003441NAC domain
PfamPF023652.2E-1312146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MAAGGGGADG LPLGLKFDPT DGELVGRFLL RRLQGKPLPL NGVILEADPL SVPPWKLLAE  60
HGRGDEGFFF AEARAKNGKG SRQKRTVEGG GLWQGQRVCV DGEKLLVPDG GGGGGVEVEI  120
AWRKYMLSFV AEGESASSGW VMHEYAVTSP AELAASPIRL YRVRFSGHGK KRKREPHLDE  180
GVRARAAPQS AGTESALLEE CVLPPQTAPQ ITGTGVALLD EVVPPTQAMS ISPPEALVDA  240
VDDADCPNQG CSGVMDDSTM VFSHLQDMIT LPTEEGDATG GAALPSMDMD ELPSCIDLHD  300
PSSMNDLHDP QSTGIESDLL EEFVPQPQPV PVPPLAALVE VADTSEGPDQ GCSGVTHDSS  360
VVFTHFSDLI VLPEEEADAT GGAAPAPAGT MSLDYQHYAL SDFEFPEYPL LEERVPVVDV  420
SSDADGADQC SSNVMDESSM VFIHLEDLTT LPAEEADQAD NCSAEPASLL DNQNYSSLGV  480
IDGEAPALSD FEFPETTEEV LNIIDFTMAD PSCLDMEFSM EDLLDFDLPA D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051720.0AP005172.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0002J01.
GenBankAP0058800.0AP005880.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0032G22.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638590.11e-118uncharacterized protein LOC107275325
TrEMBLA0A0E0EA230.0A0A0E0EA23_9ORYZ; Uncharacterized protein
STRINGOMERI07G08450.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.12e-10NAC domain containing protein 5