PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G07800.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family STAT
Protein Properties Length: 632aa    MW: 70001 Da    PI: 5.3962
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G07800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT168.41.4e-5221632018121
             STAT  18 evvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfleavskpirCisr 110
                      ++vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +k+ypflea+skpirCisr
  OMERI07G07800.1 216 KIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGMKRYPFLEAYSKPIRCISR 309
                      79****************9*************************************************************************** PP

             STAT 111 srntrsssltk 121
                      +r++r+++++k
  OMERI07G07800.1 310 NRTSRPLGSAK 320
                      *****988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498993.33E-68166IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.102.8E-4548615IPR000980SH2 domain
SuperFamilySSF555501.81E-6549618IPR000980SH2 domain
PROSITE profilePS500019.455556632IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MAAPPGCGGA DGYCDLPDVR LELDPGKVRG GGGSTVCFWL YLSSSARPSS VILHQVAEGG  60
GDKVPFLALG EGNKLLLFPL LGFHREAPTP DSSYPWTAIT NLTEVNECPL DNWFHVGCEV  120
TENIMRLHID GDLVAETHLH SLYNEPDYQD DANQINLLGS EDKLKGYVYN MELSCVLGTI  180
QQQFAKNPPF KLSIDYSCSD GIEEGDDGIW NIVGGKIVAS LVYADNGALV EKSRDDSEPP  240
LLISCDGIEY PAVSRPLPII RGRALFKLKI SQLSSKCDNK LFRIFFSTLG MKRYPFLEAY  300
SKPIRCISRN RTSRPLGSAK RIGSASMGDI QSINNFEGFG YSGKANGRLQ THDPSSVNKH  360
AKKMVLDKGA QDVMVSDSTA SDYDSMDAGS SWSLSDGDDV ESFSDAEIFR YCLDDTHERS  420
KFLRAAAPSV NEDDLIKLAN QVSLYSGCTH HRNQILMSKQ LLQEGADIWS IISKNNERAL  480
WSSAVPEIKA KFLEIVHPSN RGLSEQDFEV LRGIAGCGDD IGRDEFDKLW SWLYPVAVAL  540
SKDKINRLWD FTAHRWIEGF ITLQETENAL RSSRDRLMKP GTFVLRFPTT RSWPHPDAGG  600
LVVTYVGSDN SIHHRLLSLD VRVDRLPSSM QS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708290.0AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614085.10.0SH2 domain-containing protein A isoform X2
TrEMBLA0A0E0E9S80.0A0A0E0E9S8_9ORYZ; Uncharacterized protein
STRINGOBART10G19000.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.11e-138SH2 domain protein A