PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G05120.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 718aa    MW: 75257.7 Da    PI: 3.8067
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G05120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.65.6e-2491451128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk....d 89 
                      lppG+rF+P+d+elv ++L ++++gk+l+l+ vi ++d + + Pw+L +  +++ +e +fF++++ k+ +g+r++r +   g W+ +      +
  OMERI07G05120.1   9 LPPGLRFEPKDDELVARFLLARIQGKPLPLDGVILDADPLCAPPWRLLAD-HGRGDEAFFFAEARAKNGKGSRQKRtVEGGGCWQGQRMcvdgE 101
                      79****************************999**************743.456789*******************5455899*9776544323 PP

              NAM  90 kevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + v            + e  + k +L ++ ++ +kg ++ Wvmhey++
  OMERI07G05120.1 102 RLV--VpdgggggggGVEIAWRKYVLSYF-ADGEKG-SSGWVMHEYAI 145
                      333..235777766333336777778888.556665.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-324164IPR003441NAC domain
PROSITE profilePS5100527.8439164IPR003441NAC domain
PfamPF023659.4E-1510144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MASAAGDGLP PGLRFEPKDD ELVARFLLAR IQGKPLPLDG VILDADPLCA PPWRLLADHG  60
RGDEAFFFAE ARAKNGKGSR QKRTVEGGGC WQGQRMCVDG ERLVVPDGGG GGGGGVEIAW  120
RKYVLSYFAD GEKGSSGWVM HEYAITAPAD LASSAMRLYR IRFSGHGKKR KREPESHSAH  180
DEHGRARCAP QIAMPETALL EDSAPPPQPV HPPAAVVNCV SDVTDQGSSL VFSDQPGSIY  240
EDELQSFVPE FAARNLFVSL PQGSRGAVAE AAVIEDLALP PQPVPPPAEV VNQADDSDQG  300
CSSVFAALPD LIVLPSEEAC GSGGAAPAPS WASSPDNQND DAPAFFEFPE SMDGMVGCFD  360
FASMDNQSCT SAVSEIALLE EPFLPPPTMV NHDNNSVSDG ADQSCFSMGD NSTLVFSDLT  420
GSIDEDELQS FVPEFVSLPQ GSCEADAEAD SGGGVAPAQF AEFGGPESLD DPLNFPAEAS  480
GGGDRAAPAS SWVSSQDNQN DEAPMFFELP ESLDDMVGCF DFAAMDGQSC TSAVSETALI  540
EELVLPPAAM VNHHDDSVSD IADHGCSGAS CTSAVSETAL IEELVLPPAA MVNHHDDSVS  600
DIADHGCSGA VPPPNSEVVD LPNDSVGADQ SCSGMVDDSL SGYYEAELKD ACGGAGSMMS  660
SPDKQKEHSS SGVMDVEATG FGVPDSMDGL SCIDFAETMD DLSCIDFTID DELFDLWS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043790.0AP004379.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0589E08.
GenBankAP0052570.0AP005257.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0417F02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0E8U20.0A0A0E0E8U2_9ORYZ; Uncharacterized protein
STRINGOMERI07G05120.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.24e-13NAC domain containing protein 47