PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G03390.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 727aa    MW: 78168.8 Da    PI: 6.3763
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G03390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.44.5e-16411449240
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk 
  OMERI07G03390.1 411 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 449
                      589**********************************96 PP
2TCR512.8e-16497536140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ 
  OMERI07G03390.1 497 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCEGCKNTF 536
                      589***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-17410451IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.33411537IPR005172CRC domain
PfamPF036388.1E-12413448IPR005172CRC domain
SMARTSM011141.7E-17497538IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.7E-12499535IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MDTPDRAAAA PSAAARAEDS PLFSFIDSLS PIEPLKSAYS ASSIQAYQSL NITSISSIFT  60
SPHDNAQKES KLSKSSFAEF SESEVCADES DKNKPSKSSN AVRLFACTST LTQATHKITS  120
SVSEGTVGPP EGSNNLPPPG QFDSGSPDHN TTPCHGVRSD LKQGKCRKLQ AFQAAKTNTS  180
EKRKCLFSTE VQLMDGCQPE KLNDEILGCD WDDLISATSG ELIAYDEDHK GVQLAVSNAE  240
SCGFLLSKLT GDGDISDRTH PSSSTQTYYR ELLMDEDQTE NAQLVPDGEK NISTEEIQDN  300
LYEANGSIPT GYKVETQQQR GMRRRCLVFE AAGYSNRIVQ KESVMDLSVS TCKGKSPVQN  360
HSNPGKTPSP QLQMDDDCSA GVFLGNDHDS SQSNSPQKKR RKADNGDDGE ACKRCSCKKS  420
KCLKLYCECF AAGVYCSEPC SCQGCLNKPI HEEIVLSTRK QIEFRNPLAF APKVIRMSDA  480
GQDITGEDPN NTPASARHKR GCNCKKSSCL KKYCECYQGG VGCSSNCRCE GCKNTFGKRD  540
AAVSTEAEEM KQGGEEAENC GKEKENDLQK ANVQSEDQPF LELVPITPPF DVSSSLLKPP  600
NFSSAKPPRP TKARSNSSRS SSKAPGAVHS QKFTKIANSG LNEEMPDILR DDASPGNCVK  660
TSSPNGKRVS PPHNALSVSP SQKGGRKLIL KSIPSFPSLI GDASSGSSMN SSESAFNTAS  720
PLALGPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1641553414120Protein lin-54 homolog
5fd3_B1e-1641553414120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1397401KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0620030.0AK062003.1 Oryza sativa Japonica Group cDNA clone:001-043-D07, full insert sequence.
GenBankAK0658970.0AK065897.1 Oryza sativa Japonica Group cDNA clone:J013048O08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799594.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A0E0E8380.0A0A0E0E838_9ORYZ; Uncharacterized protein
STRINGLPERR07G04300.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.14e-77TESMIN/TSO1-like CXC 2