PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI07G02020.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 440aa    MW: 46882.8 Da    PI: 9.4987
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI07G02020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.11.9e-39601972132
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec......eaesssssasn 84 
                       g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++     ++ +as++                 
  OMERI07G02020.1  60 SGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdtasfPTHPASSAaaaappL---------- 143
                      689*************************************************************66655222222221112222.......... PP

              TCP  85 sssg........kaaksaakskksqksaasalnlak.esrakarararertrekmri 132
                         +        ++ +++ +s+ s++s+ s+l+l++ e r kar+rarer++   + 
  OMERI07G02020.1 144 ---PhaadgdqqQQLTKSGCSSTSETSKGSVLSLSRsENRVKARERARERSSAAAAA 197
                      ...11222233366777779999*************9************99877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.6E-3961193IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18962120IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.883177194IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MELAGSNNNK RGRVRGPNDD DDDAGEPDAK RHHHQLLPWP QPQQQQQHPA SRIYRVSRAS  60
GGKDRHSKVY TAKGIRDRRV RLSVSTAIQF YDLQDRLGYD QPSKAIEWLI KAAAAAIDKL  120
PSLDTASFPT HPASSAAAAA PPLPHAADGD QQQQLTKSGC SSTSETSKGS VLSLSRSENR  180
VKARERARER SSAAAAAASK DAGDDAATTT AAPASSQAAS FTELLTGMAA ANASPADHKH  240
QQQQAWQPMT VAAATADYIG FAAAAAPRTQ PRKSAAGHHS AMPHTFASPA PHLANITPIA  300
MAPAQHFTLT PAAAAEHHAE MTHYSFDHFM PVHAAAAAAA ASTPAGGDYN LNFSMSSGLV  360
GVHSRGTLQS NSQSHLSSHH HHHHHHHQQQ QLQRLSAPLD APNIPFLFSP AAAPTDTQFA  420
AALQLWDGFR HADIKEKGKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-3167121155Putative transcription factor PCF6
5zkt_B5e-3167121155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037040.0AP003704.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1048_C10.
GenBankAP0061630.0AP006163.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1364A02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644886.10.0transcription factor PCF6
TrEMBLA0A0E0E7I50.0A0A0E0E7I5_9ORYZ; Uncharacterized protein
STRINGOS07T0152000-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-39TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2