PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI07G00950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 189aa MW: 19713.1 Da PI: 11.2135 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.1 | 8.1e-13 | 70 | 121 | 1 | 52 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 e++++r rrk++NRe+ArrsR+R+++++eeLe+ ++eL ae++aL+++l+ OMERI07G00950.1 70 EERRRRLRRKISNRESARRSRARRRQRVEELERAADELRAERRALASRLDAT 121 68899*******************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.6E-8 | 69 | 120 | No hit | No description |
SMART | SM00338 | 2.1E-7 | 70 | 134 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.5E-9 | 70 | 120 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.036 | 72 | 135 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.64E-8 | 74 | 125 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 77 | 92 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MPLDFGLPDM DVGFGLFGVD AAAAVFGYDG VASDAAAGLS PVVGAGDGSG GGGDVLLYCE 60 GGGGGEDGEE ERRRRLRRKI SNRESARRSR ARRRQRVEEL ERAADELRAE RRALASRLDA 120 TARRALAVRG ANARLHAEAG VLRRRLGEAQ RNAAVLIGLS RLLRSTANGA HGGAAPAQLP 180 NGGVASLMT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003702 | 0.0 | AP003702.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1007_H09. | |||
GenBank | AP005309 | 0.0 | AP005309.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0474G09. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CU406121 | 0.0 | CU406121.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108M06, full insert sequence. | |||
GenBank | CU406481 | 0.0 | CU406481.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103G11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466386.1 | 1e-16 | DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A0E0E749 | 1e-123 | A0A0E0E749_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI07G01010.1 | 1e-124 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16831 | 9 | 9 |