PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI07G00590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 352aa MW: 37889.7 Da PI: 7.4117 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.4 | 2.8e-32 | 225 | 280 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ OMERI07G00590.1 225 KTRRCWSPDLHRKFVAALQQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 280 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.7 | 222 | 282 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-16 | 223 | 282 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-28 | 223 | 281 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-26 | 225 | 280 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.1E-7 | 227 | 278 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MGLDVGEIGV GAADLSLDLK MFAAKSVGRV RGKDTMGDCI RRLEEEMGKI EVFRRELPLC 60 VRLLADVIDV MKEEVEKKGG DRKEDEDADA GDKSNWMSTA QLWTGNSARD AAADPEKQEK 120 GRISSEAKSN GGAFVGSGAP AFARPKPSLM RKEDMAYDVR MPDLSLLSPP ASAAAADESR 180 RQVVGFAQAA ARAAAMAASG PALSLQPQPQ PAAAQQQQQQ QQARKTRRCW SPDLHRKFVA 240 ALQQLGGPQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH NRPRVPSSTI VNQPIVLMQG 300 LCYIPQEQSS SQSGSPEGPL HFSGSGMAGG GSSAATVSCE EEDGRSESYG WK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070421 | 0.0 | AK070421.1 Oryza sativa Japonica Group cDNA clone:J023048M12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644652.1 | 0.0 | myb family transcription factor EFM | ||||
TrEMBL | A0A0E0E6Z9 | 0.0 | A0A0E0E6Z9_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI07G00630.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1817 | 37 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 2e-31 | G2-like family protein |