PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G28070.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 618aa    MW: 68595.2 Da    PI: 7.4636
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G28070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-16232276147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
  OMERI06G28070.1 232 REKWTEEEHDKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 276
                      789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-15226280IPR009057Homeodomain-like
PROSITE profilePS5129421.585227281IPR017930Myb domain
TIGRFAMsTIGR015576.5E-16230279IPR006447Myb domain, plants
SMARTSM007172.9E-14231279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-10232272IPR009057Homeodomain-like
PfamPF002492.6E-14232275IPR001005SANT/Myb domain
CDDcd001676.15E-11234277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MVLCRSSNFN PIGKAKHGVT CGTHTVIKIK MCDCRWGLAQ GSREPQDVRR LLENSSADRW  60
VPRPTWRPFL FFLFSSPPPF QKSLLSSSFL FLSHRSLLLL RRRSSSLTLP YGYGRIVAGF  120
FFPFPRRACT LFSSILFRLC LVGRFFWLFL LDPGEEGGRE ARFELLLMAS MPQLEEKDSS  180
DLAINKGLSL DLVKSPLMMN DASATVTAMQ PNEGMEEFPV KVRKPYTITK QREKWTEEEH  240
DKFLEALKLY GRSWRQIQEH IGTKTAVQIR SHAQKFFSKV VREPCSNNAI EIPPPRPKRK  300
PLHPYPRKCA NSGSDANPAT AQSKLAPVSS SSGSDQENGS PISVLSAMQS DAFGSSVSNP  360
STRCTSPASS DDGNNIPTFT SGEDNNVPCE QTGIDQCQSH KEIDQDRKDV NNMSEEDSSE  420
EEVQETSLKL FGRTVVIPDP KRRSSSDPKH ESVEQISQPS NEEMLQAPSS VGEIPAAYCA  480
PNGWLLSYNS FSFQFGESAP DARIPPLHVW WPYYGFAPIS HPRGLSTVMQ QTEGSDESDG  540
GKSHSAESSS DSGGNVQMTA PQSSTIAESL GAIYVRESGS SFELKPSANS AFIRVKPSNS  600
GDEEVIRGFV PYKRCKFQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8295230.0CT829523.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644385.10.0protein REVEILLE 1 isoform X1
TrEMBLA0A0E0E6M60.0A0A0E0E6M6_9ORYZ; Uncharacterized protein
STRINGOMERI06G26480.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.12e-35MYB_related family protein