PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI06G27920.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 288aa MW: 32774.2 Da PI: 8.208

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI06G27920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	148.3	3.8e-46	19	148	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkdkevl 93 pGfrFhPt+eel+ +yLk+ v+gkkl++ ++i++v++y+++P++Lp ++ +e+ewyfF++rd+k+at g r++r+t++g+Wkatg+d++v OMERI06G27920.1 19 LPGFRFHPTEEELLEFYLKQVVQGKKLKF-DIIPTVHLYRHDPRELPGLARIGEREWYFFVPRDRKQATggGGRPSRTTERGFWKATGSDRAVR 111 59************************9.99***********8778899**********84467***************** PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++l+glkktLv+y+grap+g+ktdWvm+eyrl OMERI06G27920.1 112 CAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 148 98777788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-53	16	173	IPR003441	NAC domain
PROSITE profile	PS51005	52.527	18	173	IPR003441	NAC domain
Pfam	PF02365	1.4E-24	20	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MEQQQRSRST GGEVEVEQLP GFRFHPTEEE LLEFYLKQVV QGKKLKFDII PTVHLYRHDP 60 RELPGLARIG EREWYFFVPR DRKQATGGGG RPSRTTERGF WKATGSDRAV RCAADPKRLI 120 GLKKTLVYYE GRAPRGTKTD WVMNEYRLPD AIPDTMQLQM QHDDMVLCKV YRKAVSLKEL 180 EQRVAMEELA RSTTSSGTHN TGSPLQQDSS SISISSSSDA MKKEAVVVVD EAAAAAHELV 240 RPATLSLPQL EVARPQSGLE WMQEPFLTQL RSPWMETWSP YYASVLNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-46	8	173	5	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBank	CU406703	0.0	CU406703.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C111K18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643570.1	0.0	NAC domain-containing protein 22-like
Swissprot	Q10S65	1e-103	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A0E0E6K0	0.0	A0A0E0E6K0_9ORYZ; Uncharacterized protein
STRING	OMERI06G26300.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	5e-78	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]