PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G27920.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 288aa    MW: 32774.2 Da    PI: 8.208
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G27920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.33.8e-46191482128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknratksgyWkatgkdkevl 93 
                       pGfrFhPt+eel+ +yLk+ v+gkkl++ ++i++v++y+++P++Lp  ++ +e+ewyfF++rd+k+at  g r++r+t++g+Wkatg+d++v 
  OMERI06G27920.1  19 LPGFRFHPTEEELLEFYLKQVVQGKKLKF-DIIPTVHLYRHDPRELPGLARIGEREWYFFVPRDRKQATggGGRPSRTTERGFWKATGSDRAVR 111
                      59**************************9.99***************8778899**************84467********************* PP

              NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++   ++l+glkktLv+y+grap+g+ktdWvm+eyrl
  OMERI06G27920.1 112 CAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 148
                      98777788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5316173IPR003441NAC domain
PROSITE profilePS5100552.52718173IPR003441NAC domain
PfamPF023651.4E-2420148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEQQQRSRST GGEVEVEQLP GFRFHPTEEE LLEFYLKQVV QGKKLKFDII PTVHLYRHDP  60
RELPGLARIG EREWYFFVPR DRKQATGGGG RPSRTTERGF WKATGSDRAV RCAADPKRLI  120
GLKKTLVYYE GRAPRGTKTD WVMNEYRLPD AIPDTMQLQM QHDDMVLCKV YRKAVSLKEL  180
EQRVAMEELA RSTTSSGTHN TGSPLQQDSS SISISSSSDA MKKEAVVVVD EAAAAAHELV  240
RPATLSLPQL EVARPQSGLE WMQEPFLTQL RSPWMETWSP YYASVLNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-4681735168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankCU4067030.0CU406703.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C111K18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643570.10.0NAC domain-containing protein 22-like
SwissprotQ10S651e-103NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A0E0E6K00.0A0A0E0E6K0_9ORYZ; Uncharacterized protein
STRINGOMERI06G26300.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.15e-78NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]