PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G26300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 258aa    MW: 28086.5 Da    PI: 8.859
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G26300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.68.8e-18118172256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++l+L+ rqV vWFqNrRa+ k
  OMERI06G26300.1 118 RKKLQLTKEQSTLLEDSFRVHNILSHTQKHELARQLKLKPRQVEVWFQNRRARTK 172
                      778899***********************************************98 PP

2HD-ZIP_I/II115.72.7e-37118205188
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                      +kk++l+keq++lLE+sF+ ++ L++++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en++L++e  e+r
  OMERI06G26300.1 118 RKKLQLTKEQSTLLEDSFRVHNILSHTQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENKQLKHELMEVR 205
                      69*********************************************************************************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-17103175IPR009057Homeodomain-like
SuperFamilySSF466891.41E-18105175IPR009057Homeodomain-like
PROSITE profilePS5007117.006114174IPR001356Homeobox domain
SMARTSM003891.8E-12116178IPR001356Homeobox domain
PfamPF000464.0E-15118172IPR001356Homeobox domain
CDDcd000861.31E-12118175No hitNo description
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
SMARTSM003403.6E-15174220IPR003106Leucine zipper, homeobox-associated
PfamPF021831.7E-8174205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MYSFSSMEGE DLGAWLGLGI GGGGYAYGGD DCRRSPSSPS PVQMLFSQHV KEEITRGYDH  60
GRDDEQASGS KIMKGERGAR LRVMRSIRNN GGDGSRSRVL SLGDAGSDGG CGGGGGTRKK  120
LQLTKEQSTL LEDSFRVHNI LSHTQKHELA RQLKLKPRQV EVWFQNRRAR TKLKQTEVDC  180
EFLKRCCESL TDENKQLKHE LMEVRRLASA AAGSQLYVQF PRAAAMVNVC PSCEKVTVMG  240
GGGDGDGETG KSSSSYSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166174RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054450.0AP005445.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0028E05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643687.11e-135homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F61e-132HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A0E0E5V60.0A0A0E0E5V6_9ORYZ; Uncharacterized protein
STRINGOMERI06G24530.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-45HD-ZIP family protein