PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI06G26300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 258aa MW: 28086.5 Da PI: 8.859 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.6 | 8.8e-18 | 118 | 172 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++l+L+ rqV vWFqNrRa+ k OMERI06G26300.1 118 RKKLQLTKEQSTLLEDSFRVHNILSHTQKHELARQLKLKPRQVEVWFQNRRARTK 172 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 115.7 | 2.7e-37 | 118 | 205 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk++l+keq++lLE+sF+ ++ L++++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en++L++e e+r OMERI06G26300.1 118 RKKLQLTKEQSTLLEDSFRVHNILSHTQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENKQLKHELMEVR 205 69*********************************************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-17 | 103 | 175 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.41E-18 | 105 | 175 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.006 | 114 | 174 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-12 | 116 | 178 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.0E-15 | 118 | 172 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.31E-12 | 118 | 175 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 149 | 172 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.6E-15 | 174 | 220 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.7E-8 | 174 | 205 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MYSFSSMEGE DLGAWLGLGI GGGGYAYGGD DCRRSPSSPS PVQMLFSQHV KEEITRGYDH 60 GRDDEQASGS KIMKGERGAR LRVMRSIRNN GGDGSRSRVL SLGDAGSDGG CGGGGGTRKK 120 LQLTKEQSTL LEDSFRVHNI LSHTQKHELA RQLKLKPRQV EVWFQNRRAR TKLKQTEVDC 180 EFLKRCCESL TDENKQLKHE LMEVRRLASA AAGSQLYVQF PRAAAMVNVC PSCEKVTVMG 240 GGGDGDGETG KSSSSYSS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 166 | 174 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP005445 | 0.0 | AP005445.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0028E05. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643687.1 | 1e-135 | homeobox-leucine zipper protein HOX18 | ||||
Swissprot | Q5Z6F6 | 1e-132 | HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18 | ||||
TrEMBL | A0A0E0E5V6 | 0.0 | A0A0E0E5V6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI06G24530.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37790.1 | 5e-45 | HD-ZIP family protein |