PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G24740.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 302aa    MW: 34018.6 Da    PI: 8.429
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G24740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.15.1e-51141501128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                      lppGfrFhP+d+elv +yL++k+ +                    v+ +vd++k+ePwdLp+ +  + kewyf+s rd+kyatg+r+nrat+sg
  OMERI06G24740.1  14 LPPGFRFHPRDDELVLDYLERKLLHGGvggaaA---AavtiygcpVMVDVDLNKCEPWDLPEIACVGGKEWYFYSLRDRKYATGQRTNRATESG 104
                      79********************99999665541...1455677768***************7666689************************** PP

              NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      yWkatgkd+++ + kg lvg++ktLvfykgrapkg+kt+Wvmhe+r 
  OMERI06G24740.1 105 YWKATGKDRPISR-KGLLVGMRKTLVFYKGRAPKGKKTEWVMHEFRK 150
                      ***********99.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-594173IPR003441NAC domain
PROSITE profilePS5100554.14714173IPR003441NAC domain
PfamPF023652.4E-2515149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSGMNSLSMV EARLPPGFRF HPRDDELVLD YLERKLLHGG VGGAAAAAVT IYGCPVMVDV  60
DLNKCEPWDL PEIACVGGKE WYFYSLRDRK YATGQRTNRA TESGYWKATG KDRPISRKGL  120
LVGMRKTLVF YKGRAPKGKK TEWVMHEFRK EGQGDPMKLP LKEDWVLCRV FYKSRTTIAK  180
LPTEGSYNNI DSVARTSLPP LTDNYIAFDQ PGSMQNLEGY EQVPCFSNNP SQQPSSSMNV  240
PLTSAMVDQE QNNMGRAIKD VLSQFTKFEG NVKREALQSN FSQDGFDYLA ESGFTQMWNS  300
LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-491017411169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636480.0AK063648.1 Oryza sativa Japonica Group cDNA clone:001-119-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881778.10.0NAC domain-containing protein 21/22
SwissprotQ84TE68e-91NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0E5970.0A0A0E0E597_9ORYZ; Uncharacterized protein
STRINGOMERI06G23060.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-90NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]