PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI06G24380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22518.6 Da PI: 5.1564 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.4 | 5.9e-21 | 9 | 46 | 1 | 38 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 krie+ ++rqvtfskRr+g lKKA+EL vLCda+v v+ OMERI06G24380.1 9 KRIEDATRRQVTFSKRRAGFLKKAHELAVLCDAQVGVV 46 79*********************************998 PP | |||||||
2 | K-box | 61.6 | 3.1e-21 | 47 | 131 | 16 | 99 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ e+++L++ei++L+ +R+ GedL+s ++ eL qL+ qLe+sl+k+ ++K+el+ +q+e+++++ + ++e+n+ L +++ OMERI06G24380.1 47 QMVMEITRLRNEIDQLEAGLRRQTGEDLSSVaTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMMS 131 6789**************************84689********************************************988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.0E-24 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.11E-21 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.175 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-18 | 10 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.626 | 45 | 136 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.7E-21 | 47 | 130 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGRGKIEMKR IEDATRRQVT FSKRRAGFLK KAHELAVLCD AQVGVVQMVM EITRLRNEID 60 QLEAGLRRQT GEDLSSVATV DELSQLQLQL ESSLSKVHAR KDELMSQQLE DMRRMHQTVH 120 EQNNFLCRMM SENWQSPGSG EASAMEALTM LPAAAFNCFF PEEEEKGVAA SSTLLQLWPQ 180 PHDGDQPDLR LWYIEDR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY174093 | 1e-132 | AY174093.1 Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882177.1 | 4e-75 | MADS-box transcription factor 30 isoform X7 | ||||
Swissprot | Q655V4 | 1e-76 | MAD30_ORYSJ; MADS-box transcription factor 30 | ||||
TrEMBL | A0A0E0E551 | 1e-144 | A0A0E0E551_9ORYZ; Uncharacterized protein | ||||
STRING | OS06T0667200-00 | 1e-117 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 6e-23 | MIKC_MADS family protein |