PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI06G23750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 337aa MW: 36978.9 Da PI: 8.1617 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 116.4 | 1.5e-36 | 60 | 137 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC +l key+r+h+vCe h+k+ v+v+g+ +rfCqqCsrfh+ sefD+ekrsCrrrL++hn+rrrk+q+ OMERI06G23750.1 60 RCQVEGCGLELGGYKEYYRKHRVCEPHTKCLRVVVAGQDRRFCQQCSRFHAPSEFDQEKRSCRRRLSDHNARRRKPQT 137 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-29 | 55 | 122 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.872 | 58 | 135 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.12E-36 | 59 | 141 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-28 | 61 | 134 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MECNPVSSST SSSLLWDWDA TASAEAPPPP GKRGGRDSSS ASAKRGRSAA AGDAAAEAPR 60 CQVEGCGLEL GGYKEYYRKH RVCEPHTKCL RVVVAGQDRR FCQQCSRFHA PSEFDQEKRS 120 CRRRLSDHNA RRRKPQTDVF AFGSRTLPRS LFDDRQQISF AWDNNAPLNH ANTTSSSSWT 180 SDLQLSQVMD ISKRSRKAGA DSANIRLSNA LPTLCHDTNE LLPIKGADAS ETASKLDGAL 240 DVQRALSLLS ASSRGLTDPG HQTSSIIQFT NSNQNSTLPS VPNEGNSNVP FWVDGQHQAV 300 EPQVFQFTMD TGNTVFPDLE RIKPSYESSM FGLNQIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-22 | 61 | 134 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004744 | 0.0 | AP004744.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641499.1 | 0.0 | squamosa promoter-binding-like protein 11 | ||||
Swissprot | Q653Z5 | 0.0 | SPL11_ORYSJ; Squamosa promoter-binding-like protein 11 | ||||
TrEMBL | A0A0E0E4V9 | 0.0 | A0A0E0E4V9_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI06G22060.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6271 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 3e-40 | squamosa promoter binding protein-like 10 |