PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G22730.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 732aa    MW: 80781.8 Da    PI: 4.6449
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G22730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.32.3e-25186239155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r++WtpeLH+ Fv av++L G ++A+P++il++mkv+ +t+e+++SHLQkYRl
  OMERI06G22730.1 186 KQRVVWTPELHRDFVIAVHEL-GVDRAVPRKILRMMKVDYMTRENIASHLQKYRL 239
                      79*******************.********************************8 PP
2Response_reg63.61e-21181261109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ ++ll+ +l++ +y + + ++d++ al++l+e+   +Dl++ D+ m +mdG++ll+ i  e  +lp+i+ +a+ge e++ + +  
  OMERI06G22730.1  18 VLAVDDSPVCLMLLEALLRRCKY-QPTMTRDATTALRMLRERPedFDLVISDVHMLDMDGFKLLELIGLEM-DLPVIMQSANGELETMMKGVTH 109
                      799********************.9999***********877777**********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l+Kp++ +++ +
  OMERI06G22730.1 110 GACDYLVKPVSLKDIQN 126
                      ***********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.69E-3214137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.5E-3615159No hitNo description
SMARTSM004481.7E-2416128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.01317132IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.1E-1918126IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.67E-2219131No hitNo description
PROSITE profilePS5129411.731183242IPR017930Myb domain
SuperFamilySSF466891.97E-18183243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-27184244IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23186239IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MAATQATAAR KFPEGLRVLA VDDSPVCLML LEALLRRCKY QPTMTRDATT ALRMLRERPE  60
DFDLVISDVH MLDMDGFKLL ELIGLEMDLP VIMQSANGEL ETMMKGVTHG ACDYLVKPVS  120
LKDIQNIWQH VWRKRKLDIR NHNGGYNDGG ELVFATRTKR KYTRKMRNDG DNYGENKENM  180
DSTQKKQRVV WTPELHRDFV IAVHELGVDR AVPRKILRMM KVDYMTRENI ASHLQKYRLY  240
LKRISTQTGM DPDQFPEKWK YMNELDALKN YCENGRYHLT PAIASSSSSN PFARMNSASA  300
LATNGFLPTH SVQLKNSQRN MAMGTVGHGG SPRNNPVFKP LQNSSNARKC FPSGPSGSSF  360
ANISNGLVLD TGDSGSSYAD MFCKSMWETS NGSPSCHSGN SSANKSNNGV SAPANQFQVQ  420
SNCGFSASAN QFPVKSNCGF SAPANQYQVQ SNGWFSAPEN QYQVQSNGDL SVPANQFPVQ  480
SNGEFLAPTN QFPVQYPEVN NQPLVQMNQS SINHFSTIGN DYQFPDLANC SKYWQTTAPS  540
MFPDLGHNDG TSFGPSQASI TNINQISSFA ASSGQEPMFG DELHGQMSPI MSTISLSDFD  600
DQMGSFNIGN DTSPAEMMHD NFSLGSDSNT SSTTPSDSSF SCPFPDFQLD SPAMPAQMLN  660
GGDEDGILLP VLDDTVDQQD LFDQLDENNG FITGTNGPEG TDTLDDIVAE LFNDDFMEGY  720
DAVVDGDQDF VP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21182245164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035170.0AP003517.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0062J02.
GenBankAP0040080.0AP004008.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1226_A12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882103.10.0two-component response regulator ORR25
SwissprotQ67W500.0ORR25_ORYSJ; Two-component response regulator ORR25
TrEMBLA0A0E0E4E00.0A0A0E0E4E0_9ORYZ; Uncharacterized protein
STRINGOMERI06G21100.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-80response regulator 12